TCONS_00057688-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057688-protein
Unique NameTCONS_00057688-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057688-protein ID=TCONS_00057688-protein|Name=TCONS_00057688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
LINSKFLQFEEDAMEFVGTLKGAKGEQGIMGLKGEEGKQGPQGEQGIQGI
QGEKGERGARGEKGEQGIGEVGPKGEKGDSLKISEVAQEVIGLAERQIRK
LKGDQGPPGDQGPRGLPGVSGPRGPKGEAGVSTGSKANVILTDQDLDIME
DMFGVGSLAFVISTNNLFIKSLKGWISIPTESKSGLLGKLTTDSNEIASG
PTVIELTKKQITEPTDVDKKLIKETLIVPQPGIMAKRPYLMLIALNEPYS
GRMGGLAKIDKMCSTQAKAAGYFGLKFHTLISDNYNDIANMIPFRSRKKP
VANTRGEQIFPRAEDIYKSDNYTAFNPNIPIYSFDQKDVRRHASWPVKKF
WHGSHANGKLHSTKMNCRNWRSEQPFHKATASSILTYTPALNELDVRCDQ
KLIVLCLQVR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036375XLOC_036375Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057688TCONS_00057688Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010515Collagenase_NC10/endostatin
IPR008160Collagen
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Vocabulary: Cellular Component
TermDefinition
GO:0031012extracellular matrix
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0031012 extracellular matrix
molecular_function GO:0005198 structural molecule activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.160.20.50coord: 94..139
e-value: 0.043
score: 13.1
coord: 12..80
e-value: 8.3E-5
score: 21.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..80
IPR010515Collagenase NC10/endostatinPFAMPF06482Endostatincoord: 155..408
e-value: 2.7E-44
score: 151.6
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 22..79
e-value: 2.8E-8
score: 33.3
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 237..410
e-value: 2.3E-33
score: 115.1
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 237..407

Blast
[Close]
BLAST of TCONS_00057688-protein vs. Swiss-Prot (Human)
Match: COIA1 (Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=COL18A1 PE=1 SV=5)

HSP 1 Score: 114.775 bits (286), Expect = 2.321e-27
Identity = 87/289 (30.10%), Postives = 125/289 (43.25%), Query Frame = 0 
Query:  156 GSLAFVISTNNLFIKSLKGWISIPTESKSGLLGKLTTDSNEIASGPTVIEL------TKKQITEPTD----VDKKLIKET-LIVPQPGIMAK------------------------RPYLMLIALNEPYSGRMGGLAKIDKMCSTQAKAAGYFGLKFHTLISDNYNDIANMIPFRSRKK-PVANTRGEQIFPRAEDIYKSDNYTAFNPNIPIYSFDQKDVRRHASWPVKKFWHGSHANGKLHSTKMNCRNWRSEQPFHKATASSILTYTPALNELDVRCDQKLIVLCLQ 408
            G L FV     L+++   G+  +  E+++ L     TD+   A  P V++L       +++   PT      D  L     L  PQP   A                         +P L L+ALN P SG M G+   D  C  QA+A G  G  F   +S    D+ +++    R   P+ N + E +FP  E ++ S +     P   I+SFD KDV RH +WP K  WHGS  NG+   T+  C  WR+E P     ASS+L     L +    C    IVLC++
Sbjct: 1464 GWLIFVAEQEELYVRVQNGFRKVQLEARTPL--PRGTDNEVAALQPPVVQLHDSNPYPRREHPHPTARPWRADDILASPPRLPEPQPYPGAPHHSSYVHLRPARPTSPPAHSHRDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAG-TFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALF-SGSEGPLKPGARIFSFDGKDVLRHPTWPQKSVWHGSDPNGR-RLTESYCETWRTEAPSATGQASSLLGGR-LLGQSAASCHHAYIVLCIE 1746
The following BLAST results are available for this feature:
BLAST of TCONS_00057688-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COIA12.321e-2730.10Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=C... [more]
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