Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057688 ID=TCONS_00057688|Name=TCONS_00057688|organism=Clytia hemisphaerica|type=transcript|length=1754bpRun BLAST on NCBI protein sequence of TCONS_00057688-protein >TCONS_00057688-protein ID=TCONS_00057688-protein|Name=TCONS_00057688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp LINSKFLQFEEDAMEFVGTLKGAKGEQGIMGLKGEEGKQGPQGEQGIQGIRun BLAST on NCBI transcript from alignment at scaffold_297:121608..126781- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057688 ID=TCONS_00057688|Name=TCONS_00057688|organism=Clytia hemisphaerica|type=transcript|length=5174bp|location=Sequence derived from alignment at scaffold_297:121608..126781- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_297:121608..126781- >TCONS_00057688 ID=TCONS_00057688|Name=TCONS_00057688|organism=Clytia hemisphaerica|type=CDS|length=16029bp|location=Sequence derived from alignment at scaffold_297:121608..126781- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057688 vs. Swiss-Prot (Human)
Match: COIA1 (Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=COL18A1 PE=1 SV=5) HSP 1 Score: 105.916 bits (263), Expect = 1.490e-23 Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 3 Query: 711 RPYLMLIALNEPYSGRMGGLAKIDKMCSTQAKAAGYFGLKFHTLISDNYNDIANMIPFRSRKK-PVANTRGEQIFPRAEDIYKSDNYTAFNPNIPIYSFDQKDVRRHASWPVKKFWHGSHANGKLHSTKMNCRNWRSEQPFHKATASSILTYTPALNELDVRCDQKLIVLCLQ 1226 +P L L+ALN P SG M G+ D C QA+A G G F +S D+ +++ R P+ N + E +FP E ++ S + P I+SFD KDV RH +WP K WHGS NG+ T+ C WR+E P ASS+L L + C IVLC++ Sbjct: 1578 QPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAG-TFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALF-SGSEGPLKPGARIFSFDGKDVLRHPTWPQKSVWHGSDPNGR-RLTESYCETWRTEAPSATGQASSLLG-GRLLGQSAASCHHAYIVLCIE 1746 The following BLAST results are available for this feature:
BLAST of TCONS_00057688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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