TCONS_00057894-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057894-protein
Unique NameTCONS_00057894-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057894-protein ID=TCONS_00057894-protein|Name=TCONS_00057894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
RNHIKMSKTKKYKKAKSKANKDKEDTSIQEITINDQSFTDFLCPICLEIL
IEPVQMPCKHELCTQCFKSHVEDTSLSCPMCRQRISIWVRRNAKNNTLVN
QERWALIQSMFPERVQRRLDGLDDIEDQDNFVPHHNIAEEGEVRKEFEDQ
MKKIEEERAVIDAADLEYIRKLTEEDNKERQRQEELDMKAAHELQKQEMA
NLGVTLKSPSEHQRSLLALLKPKSPMKLRRRSIPNKQGSSSSSKSKATRN
ILTSPNHTITSFFQKLEHKNEPNNTQQNINDIKNSSKTNSRNCNGTNSGN
PNDSLNGSLRIERNLVSTSSDKQGVNSTSMDNISSYSSSTVTRPTPIQID
LDESITEDSDRELAERLQREYDQQWQNNNIVITPQKTPLRATDNLIRIDT
ESKSSKIDRLKSIRKRNDDLSISLHDVVPSKARKTR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036503XLOC_036503Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057894TCONS_00057894Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 137..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..342
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 39..87
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 43..81
e-value: 7.5E-7
score: 38.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 43..82
score: 12.46
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 43..85
e-value: 2.4193E-12
score: 60.5372
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 43..81
e-value: 1.8E-8
score: 34.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..118
e-value: 1.1E-16
score: 59.9

Blast
[Close]
BLAST of TCONS_00057894-protein vs. Swiss-Prot (Human)
Match: RN168 (E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.256e-30
Identity = 50/118 (42.37%), Postives = 77/118 (65.25%), Query Frame = 0 
Query:   37 SFTDFLCPICLEILIEPVQMPCKHELCTQCFKSHVEDTSLSCPMCRQRISIWVRRNAKNNTLVNQERWALIQSMFPERVQRRLDGLDDIEDQDNFVPHHNIAEEGEVRKEFEDQMKKI 154
            S ++  C IC+EIL+EPV +PC H LC  CF+S VE  SL CP CR+R+S W R + + N+LVN E W +IQ  +P   + R  G +  E  D++ P   +++ GE+R+E+E+++ K+
Sbjct:   10 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSKPGELRREYEEEISKV 127
The following BLAST results are available for this feature:
BLAST of TCONS_00057894-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1681.256e-3042.37E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens... [more]
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