|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057894 ID=TCONS_00057894|Name=TCONS_00057894|organism=Clytia hemisphaerica|type=transcript|length=2267bp
ctaGAAATCACATAAAAATGagtaaaactaaaaaatataaaaaagcaaAA
TCCAAAGCCAACAAAGACAAAGAAGACACATCAATTCAAGAAATTACTAT
AAACGACCAGTCATTTACTGATTTCCTTTGTCCAATATGTTTGGAGATCT
TAATTGAGCCTGTTCAAATGCCTTGTAAACACGAACTATGTACTCAATGT
TTCAAATCTCATGTTGAAGACACCAGTTTATCTTGTCCTATGTGCCGACA
AAGAATTTCAATATGGGTTAGAAGGAATGCTAAAAACAATACGTTAGTGA
ACCAAGAAAGATGGGCCTTGATCCAATCTATGTTTCCAGAACGTGTCCAA
CGTCGTTTAGATGGATTGGATGATATCGAAGATCAAGACAATTTTGTACC
ACATCATAACATTGCAGAGGAAGGAGAGGTGAGAAAAGAATTTGAAGATC
AAATGAAAAAAATCGAAGAAGAACGAGCGGTGATAGATGCAGCGGATTTG
GAATACATCAGGAAGTTGACGGAAGAAGATAACAAGGAGCGACAGAGACA
AGAAGAGTTGGATATGAAGGCTGCCCAcgagttgcagaaacaagaaATGG
CCAACCTTGGTGTAACATTGAAATCACCCAGTGAACATCAACGCTCATTG
CTAGCATTATTGAAACCTAAATCACCAATGAAATTGCGACGCCGAAGTAT
CCCTAACAAACAAGGGAGTAGTTCTTCATCCAAATCGAAAGCGACTCGTA
ACATATTGACGTCACCAAACCACACGATTACATCATTTTTCCAGAAATTG
GAGCACAAAAACGAACCGAATAATACTCAACAAAATATTAATGATATAAA
AAATAGCAGTAAAACGAATAGTAGAAATTGTAATGGAACGAATTCAGGAA
ATCCCAATGATAGTTTGAATGGTAGTCTTCGAATTGAAAGAAATTTAGTA
TCAACTTCCAGCGACAAACAAGGAGTAAACTCGACTTCCATGGACAACAT
TTCTTCGTATTCTAGTAGTACTGTAACTCGACCCACTCCGATTCAAATCG
ACTTAGACGAATCGATAACTGAAGACTCTGATCGGGAACTAGCCGAACGA
TTACAACGCGAATACGACCAGCAATGGCAAAATAATAACATTGTAATTAC
GCCTCAAAAAACACCTTTACGAGCCACAGATAACCTTATTAGAATTGATA
CCGAATCGAAGTCATCGAAAATTGACCGACTGAAATCGATTCGTAAGCGA
AACGATGATTTATCGATATCTTTGCATGATGTGGTCCCATCGAAAGCGAG
GAAAACGCGTTAGTTCTGATTGAGGCTATTGTTATGTTAGGTCCGATTTA
AGATTTAAGTAATGATTCTCTGGTGCTTGATTTAGTTCAGAATTTGGTGC
TTGTATGACTTTTCGCCGGAATTTCATCAATATTTGATGAACTTTATCGA
AGCCACAGTACTTTTATTCCGAATAAAAGAGGCTCACTTTTTTGAGGTTG
TTTTTTATCTCTATTAAGCTTTAAGTTTGAAGTGAGCTTTCTTTTCCTGG
TACTTTTGACATTGAATTATTTGGTTTCAAAAGCACACTGTTTTCATCCG
TGTTTGTTAGTAAGTATGGGGTACTTAGTCAATCAAGTCAATTCATAAAA
ATGAGTCTTCCTATTGGGCCATATCCATACAGGggttggacgaacatttc
cagagggtaaaccgagaaaaatttccagaggatgtttatttatttttcca
agggggtaaaaagttattctaaaacttCCAGgggttaaaaattgatttta
gattGTCCATCCTCACTTTAAGGTTTGAAAAGAATCTTTCCAAGGgtaaa
ttttgccattttccaggagGTTTTCAcacaatttcaatatttatttttga
cttgaaaaggttcgtccaccctcctgtatggttttttaatggaacatcCC
ATTAGGTATCACGTTAGATacagtttgaaaataatttagagGTCGTAGCA
AAATTATTTAGTGCGGACAAATAAAATCAAAGCAAACCCATGTAATTTCG
ATTTGGAATTTTAAACATATCTACATACAACTGATCGTTTCTAAAAGCCT
CGCCTTGTTTTATATCCAACGAATTCTCAGACTTCATTCGtgcattttta
cttttttgtgttttattgttattattatatgTAGATAATGATTTTAGTAt
ggtttttcatcatttttgaatttttttggtgTGTCGTTTACttgtaaatt
gtaaattatATGTCGGG Run BLAST on NCBI protein sequence of TCONS_00057894-protein >TCONS_00057894-protein ID=TCONS_00057894-protein|Name=TCONS_00057894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
RNHIKMSKTKKYKKAKSKANKDKEDTSIQEITINDQSFTDFLCPICLEIL
IEPVQMPCKHELCTQCFKSHVEDTSLSCPMCRQRISIWVRRNAKNNTLVN
QERWALIQSMFPERVQRRLDGLDDIEDQDNFVPHHNIAEEGEVRKEFEDQ
MKKIEEERAVIDAADLEYIRKLTEEDNKERQRQEELDMKAAHELQKQEMA
NLGVTLKSPSEHQRSLLALLKPKSPMKLRRRSIPNKQGSSSSSKSKATRN
ILTSPNHTITSFFQKLEHKNEPNNTQQNINDIKNSSKTNSRNCNGTNSGN
PNDSLNGSLRIERNLVSTSSDKQGVNSTSMDNISSYSSSTVTRPTPIQID
LDESITEDSDRELAERLQREYDQQWQNNNIVITPQKTPLRATDNLIRIDT
ESKSSKIDRLKSIRKRNDDLSISLHDVVPSKARKTR Run BLAST on NCBI transcript from alignment at scaffold_301:30652..34589+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057894 ID=TCONS_00057894|Name=TCONS_00057894|organism=Clytia hemisphaerica|type=transcript|length=3938bp|location=Sequence derived from alignment at scaffold_301:30652..34589+ (Clytia hemisphaerica)
ctaGAAATCACATAAAAATGagtaaaactaaaaaatataaaaaagcaaAA
TCCAAAGCCAACAAAGACAAAGAAGACACATCAATTCAAGAAATTACTAT
AAACGACCAGTCATTTACTGATTTCCTTTGTCCAATATGTTTGGAGATCT
TAATTGAGCCTGTTCAAATGCCTTGTAAACACGAACTATGTACTCAATGT
TTCAAATCTCATGTTGAAGACACCAGTTTATCTTGTCCTATGTGCCGACA
AAGAATTTCAATATGGGTTAGAAGGAATGCTAAAAACAATACGTTAGTGA
ACCAAGAAAGATGGGCCTTGATCCAATCTATGTTTCCAGAACGTGTCCAA
CGTCGTTTAGATGGATTGGATGATATCGAAGATCAAGACAATTTTGGTTT
GTGTTTATAAGAACACTGAACTCATAAAAATAGACTGGGATGGATTGAAT
TCTCAATGTACCTCTATTGACCTAAGTGATAAAGACTAGGGGATTAGGTT
TTACTCTAATAATGCAGGACTGAATAATGCTTTATGTATTATCTGAGCTA
AATGTTTCACAGTTCTTGCTACGCTTCTGACTAAAAAATCCAGGGATGGA
GATTACTAGAGATATCCATTCCTGTCCCTATTTTTATAGTTCGATGGTAT
AACATCATGTAAATATTTAATTATTGGTTCTGATTGGTTGACAAATACGC
TCTTTTTTTATTGAACAATCAtactaaaaaatgccaaaaataagaacaat
tttaaaacaacCCCAATTTTAAGCAAGATAAGAATCAAAACAGTAAAATA
GGGTATCAAGCCAGAAAAGACACAAATTTGATCTTAAAAACATGATCAGA
ACAATTCGAGGCAAAAGTGTCAAAAGAATAAGAGTCGAAACAATATAAAT
CGTGCCTCAACAAAAATTAGctggttctttaaaaaaaagagtgtatactG
TTTCATATTTTCATCCTATCTGTTCTTTTATTcaattatattttatttca
gCCCAAAATTTCAATGCAAATAATTATAATCAATGcaattaaaaaggttt
ggtaaaAGGTGTTTCTCAAATGGGTTAGTCTGAACTAAGGTAAGAAGTTT
GTAACAACAAAGCAAATTATTGATCTTTATGTTATGTCTTTTTTGCATAT
TTCATTTACAGTACCACATCATAACATTGCAGAGGAAGGAGAGGTGAGAA
AAGAATTTGAAGATCAAATGAAAAAAGTAAGTTTTCTAGTTCTGTCATGT
CACTTGCAAAACAAGTTGGAttaaccaattttttttcgaaatcaatTCCT
TAGCCGGATGTTTCGTTTCTGGGGATGCTTATAAGTAGTTTTAGTTGTGA
AAAATACTGACGACCTGCACTTAACACTTAACATTTGATTTAGTATTCAT
TTCAAGTCTGGGACCAAAACATGTTGATAACTTTAGTTTGCTTAAGGCTT
TCTCTTGATATTCAAGAGATTTTCATGTCTTGAGGCCtttcatattcatg
atattcgtgAGGTAAATGTTTTATATGGAAGCACTCAAAATAGCCCAGGC
GTTTACCACAAGTTTCTTTGTTTCAATCCGAAATTATTGGCAAAGACCGG
GTCTTTTTGAGTGCTTCTGTATAAAACAATACGCCATATGAAAATCACGA
ATACAGTGGAGTTCACtactcgaacacgcacgaggaacacaaatttgttc
gacttatggagtaaggtttataagccatcgttaactgaagggaccataaa
acttgttcgagttaagagaCATTTCGATGTGAAGtataaggtttataagg
cattgttaactgaagggaccataaaacttgttcgagttaaggagacattc
gagctaTAGAGGTCCGAGTTACAGAAACTCTACTTTAATAACATTGTTTA
TTAGATCGAAGAAGAACGAGCGGTGATAGATGCAGCGGATTTGGAATACA
TCAGGAAGTTGACGGAAGAAGATAACAAGGAGCGACAGAGACAAGAAGAG
TTGGATATGAAGGCTGCCCAcgagttgcagaaacaagaaATGGCCAACCT
TGGTAAAGGGGATGGGACGATTAataattgtttgaaaatttagatCTTCC
TACTCAAAAAAAGTCTCTTTTATCGTAGTCGCTGGTTTTGAAATTAATAC
ACTGTATGAATCATTATTATCATCACTTTCTGCACAATGTTTAGGTTTTT
CTTATGCTGTTCTGACTTAAATCCAACCTGTTCAACCTGTTCTTTCTATA
GTgacttcatattttttttttctctccaaGGTGTAACATTGAAATCACCC
AGTGAACATCAACGCTCATTGCTAGCATTATTGAAACCTAAATCACCAAT
GAAATTGCGACGCCGAAGTATCCCTAACAAACAAGGGAGTAGTTCTTCAT
CCAAATCGAAAGCGACTCGTAACATATTGACGTCACCAAACCACACGATT
ACATCATTTTTCCAGAAATTGGAGCACAAAAACGAACCGAATAATACTCA
ACAAAATATTAATGATATAAAAAATAGCAGTAAAACGAATAGTAGAAATT
GTAATGGAACGAATTCAGGAAATCCCAATGATAGTTTGAATGGTAGTCTT
CGAATTGAAAGAAATTTAGTATCAACTTCCAGCGACAAACAAGGAGTAAA
CTCGACTTCCATGGACAACATTTCTTCGTATTCTAGTAGTACTGTAACTC
GACCCACTCCGATTCAAATCGACTTAGACGAATCGATAACTGAAGACTCT
GATCGGGAACTAGCCGAACGATTACAACGCGAATACGACCAGCAATGGCA
AAATAATAACATTGTAATTACGCCTCAAAAAACACCTTTACGAGCCACAG
ATAACCTTATTAGAATTGATACCGAATCGAAGTCATCGAAAATTGACCGA
CTGAAATCGATTCGTAAGCGAAACGATGATTTATCGATATCTTTGCATGA
TGTGGTCCCATCGAAAGCGAGGAAAACGCGTTAGTTCTGATTGAGGCTAT
TGTTATGTTAGGTCCGATTTAAGATTTAAGTAATGATTCTCTGGTGCTTG
ATTTAGTTCAGAATTTGGTGCTTGTATGACTTTTCGCCGGAATTTCATCA
ATATTTGATGAACTTTATCGAAGCCACAGTACTTTTATTCCGAATAAAAG
AGGCTCACTTTTTTGAGGTTGTTTTTTATCTCTATTAAGCTTTAAGTTTG
AAGTGAGCTTTCTTTTCCTGGTACTTTTGACATTGAATTATTTGGTTTCA
AAAGCACACTGTTTTCATCCGTGTTTGTTAGTAAGTATGGGGTACTTAGT
CAATCAAGTCAATTCATAAAAATGAGTCTTCCTATTGGGCCATATCCATA
CAGGggttggacgaacatttccagagggtaaaccgagaaaaatttccaga
ggatgtttatttatttttccaagggggtaaaaagttattctaaaacttCC
AGgggttaaaaattgattttagattGTCCATCCTCACTTTAAGGTTTGAA
AAGAATCTTTCCAAGGgtaaattttgccattttccaggagGTTTTCAcac
aatttcaatatttatttttgacttgaaaaggttcgtccaccctcctgtat
ggttttttaatggaacatcCCATTAGGTATCACGTTAGATacagtttgaa
aataatttagagGTCGTAGCAAAATTATTTAGTGCGGACAAATAAAATCA
AAGCAAACCCATGTAATTTCGATTTGGAATTTTAAACATATCTACATACA
ACTGATCGTTTCTAAAAGCCTCGCCTTGTTTTATATCCAACGAATTCTCA
GACTTCATTCGtgcatttttacttttttgtgttttattgttattattata
tgTAGATAATGATTTTAGTAtggtttttcatcatttttgaatttttttgg
tgTGTCGTTTACttgtaaattgtaaattatATGTCGGG Coding sequence (CDS) from alignment at scaffold_301:30652..34589+ >TCONS_00057894 ID=TCONS_00057894|Name=TCONS_00057894|organism=Clytia hemisphaerica|type=CDS|length=5244bp|location=Sequence derived from alignment at scaffold_301:30652..34589+ (Clytia hemisphaerica)
aGAAATCACATAAAAATGagtaaaactaaaaaatataaaaaagcaaAATC
CAAAGCCAACAAAGACAAAGAAGACACATCAATTCAAGAAATTACTATAA
ACGACCAGTCATTTACTGATTTCCTTTGTCCAATATGTTTGGAGATCTTA
ATTGAGCCTGTTCAAATGCCTTGTAAACACGAACTATGTACTCAATGTTT
CAAATCTCATGTTGAAGACACCAGTTTATCTTGTCCTATGTGCCGACAAA
GAATTTCAATATGGGTTAGAAGGAATGCTAAAAACAATACGTTAGTGAAC
CAAGAAAGATGGGCCTTGATCCAATCTATGTTTCCAGAACGTGTCCAACG
TCGTTTAGATGGATTGGATGATATCGAAGATCAAGACAATTTTGTACCAC
ATCATAACATTGCAGAGGAAGGAGAGGTGAGAAAAGAATTTGAAGATCAA
ATGAAAAAAATCGAAGAAGAACGAGCGGTGATAGATGCAGCGGATTTGGA
ATACATCAGGAAGTTGACGGAAGAAGATAACAAGGAGCGACAGAGACAAG
AAGAGTTGGATATGAAGGCTGCCCAcgagttgcagaaacaagaaATGGCC
AACCTTGGTGTAACATTGAAATCACCCAGTGAACATCAACGCTCATTGCT
AGCATTATTGAAACCTAAATCACCAATGAAATTGCGACGCCGAAGTATCC
CTAACAAACAAGGGAGTAGTTCTTCATCCAAATCGAAAGCGACTCGTAAC
ATATTGACGTCACCAAACCACACGATTACATCATTTTTCCAGAAATTGGA
GCACAAAAACGAACCGAATAATACTCAACAAAATATTAATGATATAAAAA
ATAGCAGTAAAACGAATAGTAGAAATTGTAATGGAACGAATTCAGGAAAT
CCCAATGATAGTTTGAATGGTAGTCTTCGAATTGAAAGAAATTTAGTATC
AACTTCCAGCGACAAACAAGGAGTAAACTCGACTTCCATGGACAACATTT
CTTCGTATTCTAGTAGTACTGTAACTCGACCCACTCCGATTCAAATCGAC
TTAGACGAATCGATAACTGAAGACTCTGATCGGGAACTAGCCGAACGATT
ACAACGCGAATACGACCAGCAATGGCAAAATAATAACATTGTAATTACGC
CTCAAAAAACACCTTTACGAGCCACAGATAACCTTATTAGAATTGATACC
GAATCGAAGTCATCGAAAATTGACCGACTGAAATCGATTCGTAAGCGAAA
CGATGATTTATCGATATCTTTGCATGATGTGGTCCCATCGAAAGCGAGGA
AAACGCGTTAGaGAAATCACATAAAAATGagtaaaactaaaaaatataaa
aaagcaaAATCCAAAGCCAACAAAGACAAAGAAGACACATCAATTCAAGA
AATTACTATAAACGACCAGTCATTTACTGATTTCCTTTGTCCAATATGTT
TGGAGATCTTAATTGAGCCTGTTCAAATGCCTTGTAAACACGAACTATGT
ACTCAATGTTTCAAATCTCATGTTGAAGACACCAGTTTATCTTGTCCTAT
GTGCCGACAAAGAATTTCAATATGGGTTAGAAGGAATGCTAAAAACAATA
CGTTAGTGAACCAAGAAAGATGGGCCTTGATCCAATCTATGTTTCCAGAA
CGTGTCCAACGTCGTTTAGATGGATTGGATGATATCGAAGATCAAGACAA
TTTTGTACCACATCATAACATTGCAGAGGAAGGAGAGGTGAGAAAAGAAT
TTGAAGATCAAATGAAAAAAATCGAAGAAGAACGAGCGGTGATAGATGCA
GCGGATTTGGAATACATCAGGAAGTTGACGGAAGAAGATAACAAGGAGCG
ACAGAGACAAGAAGAGTTGGATATGAAGGCTGCCCAcgagttgcagaaac
aagaaATGGCCAACCTTGGTGTAACATTGAAATCACCCAGTGAACATCAA
CGCTCATTGCTAGCATTATTGAAACCTAAATCACCAATGAAATTGCGACG
CCGAAGTATCCCTAACAAACAAGGGAGTAGTTCTTCATCCAAATCGAAAG
CGACTCGTAACATATTGACGTCACCAAACCACACGATTACATCATTTTTC
CAGAAATTGGAGCACAAAAACGAACCGAATAATACTCAACAAAATATTAA
TGATATAAAAAATAGCAGTAAAACGAATAGTAGAAATTGTAATGGAACGA
ATTCAGGAAATCCCAATGATAGTTTGAATGGTAGTCTTCGAATTGAAAGA
AATTTAGTATCAACTTCCAGCGACAAACAAGGAGTAAACTCGACTTCCAT
GGACAACATTTCTTCGTATTCTAGTAGTACTGTAACTCGACCCACTCCGA
TTCAAATCGACTTAGACGAATCGATAACTGAAGACTCTGATCGGGAACTA
GCCGAACGATTACAACGCGAATACGACCAGCAATGGCAAAATAATAACAT
TGTAATTACGCCTCAAAAAACACCTTTACGAGCCACAGATAACCTTATTA
GAATTGATACCGAATCGAAGTCATCGAAAATTGACCGACTGAAATCGATT
CGTAAGCGAAACGATGATTTATCGATATCTTTGCATGATGTGGTCCCATC
GAAAGCGAGGAAAACGCGTTAGaGAAATCACATAAAAATGagtaaaacta
aaaaatataaaaaagcaaAATCCAAAGCCAACAAAGACAAAGAAGACACA
TCAATTCAAGAAATTACTATAAACGACCAGTCATTTACTGATTTCCTTTG
TCCAATATGTTTGGAGATCTTAATTGAGCCTGTTCAAATGCCTTGTAAAC
ACGAACTATGTACTCAATGTTTCAAATCTCATGTTGAAGACACCAGTTTA
TCTTGTCCTATGTGCCGACAAAGAATTTCAATATGGGTTAGAAGGAATGC
TAAAAACAATACGTTAGTGAACCAAGAAAGATGGGCCTTGATCCAATCTA
TGTTTCCAGAACGTGTCCAACGTCGTTTAGATGGATTGGATGATATCGAA
GATCAAGACAATTTTGTACCACATCATAACATTGCAGAGGAAGGAGAGGT
GAGAAAAGAATTTGAAGATCAAATGAAAAAAATCGAAGAAGAACGAGCGG
TGATAGATGCAGCGGATTTGGAATACATCAGGAAGTTGACGGAAGAAGAT
AACAAGGAGCGACAGAGACAAGAAGAGTTGGATATGAAGGCTGCCCAcga
gttgcagaaacaagaaATGGCCAACCTTGGTGTAACATTGAAATCACCCA
GTGAACATCAACGCTCATTGCTAGCATTATTGAAACCTAAATCACCAATG
AAATTGCGACGCCGAAGTATCCCTAACAAACAAGGGAGTAGTTCTTCATC
CAAATCGAAAGCGACTCGTAACATATTGACGTCACCAAACCACACGATTA
CATCATTTTTCCAGAAATTGGAGCACAAAAACGAACCGAATAATACTCAA
CAAAATATTAATGATATAAAAAATAGCAGTAAAACGAATAGTAGAAATTG
TAATGGAACGAATTCAGGAAATCCCAATGATAGTTTGAATGGTAGTCTTC
GAATTGAAAGAAATTTAGTATCAACTTCCAGCGACAAACAAGGAGTAAAC
TCGACTTCCATGGACAACATTTCTTCGTATTCTAGTAGTACTGTAACTCG
ACCCACTCCGATTCAAATCGACTTAGACGAATCGATAACTGAAGACTCTG
ATCGGGAACTAGCCGAACGATTACAACGCGAATACGACCAGCAATGGCAA
AATAATAACATTGTAATTACGCCTCAAAAAACACCTTTACGAGCCACAGA
TAACCTTATTAGAATTGATACCGAATCGAAGTCATCGAAAATTGACCGAC
TGAAATCGATTCGTAAGCGAAACGATGATTTATCGATATCTTTGCATGAT
GTGGTCCCATCGAAAGCGAGGAAAACGCGTTAGaGAAATCACATAAAAAT
GagtaaaactaaaaaatataaaaaagcaaAATCCAAAGCCAACAAAGACA
AAGAAGACACATCAATTCAAGAAATTACTATAAACGACCAGTCATTTACT
GATTTCCTTTGTCCAATATGTTTGGAGATCTTAATTGAGCCTGTTCAAAT
GCCTTGTAAACACGAACTATGTACTCAATGTTTCAAATCTCATGTTGAAG
ACACCAGTTTATCTTGTCCTATGTGCCGACAAAGAATTTCAATATGGGTT
AGAAGGAATGCTAAAAACAATACGTTAGTGAACCAAGAAAGATGGGCCTT
GATCCAATCTATGTTTCCAGAACGTGTCCAACGTCGTTTAGATGGATTGG
ATGATATCGAAGATCAAGACAATTTTGTACCACATCATAACATTGCAGAG
GAAGGAGAGGTGAGAAAAGAATTTGAAGATCAAATGAAAAAAATCGAAGA
AGAACGAGCGGTGATAGATGCAGCGGATTTGGAATACATCAGGAAGTTGA
CGGAAGAAGATAACAAGGAGCGACAGAGACAAGAAGAGTTGGATATGAAG
GCTGCCCAcgagttgcagaaacaagaaATGGCCAACCTTGGTGTAACATT
GAAATCACCCAGTGAACATCAACGCTCATTGCTAGCATTATTGAAACCTA
AATCACCAATGAAATTGCGACGCCGAAGTATCCCTAACAAACAAGGGAGT
AGTTCTTCATCCAAATCGAAAGCGACTCGTAACATATTGACGTCACCAAA
CCACACGATTACATCATTTTTCCAGAAATTGGAGCACAAAAACGAACCGA
ATAATACTCAACAAAATATTAATGATATAAAAAATAGCAGTAAAACGAAT
AGTAGAAATTGTAATGGAACGAATTCAGGAAATCCCAATGATAGTTTGAA
TGGTAGTCTTCGAATTGAAAGAAATTTAGTATCAACTTCCAGCGACAAAC
AAGGAGTAAACTCGACTTCCATGGACAACATTTCTTCGTATTCTAGTAGT
ACTGTAACTCGACCCACTCCGATTCAAATCGACTTAGACGAATCGATAAC
TGAAGACTCTGATCGGGAACTAGCCGAACGATTACAACGCGAATACGACC
AGCAATGGCAAAATAATAACATTGTAATTACGCCTCAAAAAACACCTTTA
CGAGCCACAGATAACCTTATTAGAATTGATACCGAATCGAAGTCATCGAA
AATTGACCGACTGAAATCGATTCGTAAGCGAAACGATGATTTATCGATAT
CTTTGCATGATGTGGTCCCATCGAAAGCGAGGAAAACGCGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057894-exon-scaffold_301-1491911889:30652..31047 | TCONS_00057894-exon-scaffold_301-1491911889:30652..31047 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1510915933:30652..31047 | TCONS_00057894-exon-scaffold_301-1510915933:30652..31047 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1575043694:30652..31047 | TCONS_00057894-exon-scaffold_301-1575043694:30652..31047 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1491911889:31813..31877 | TCONS_00057894-exon-scaffold_301-1491911889:31813..31877 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1510915933:31813..31877 | TCONS_00057894-exon-scaffold_301-1510915933:31813..31877 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1575043694:31813..31877 | TCONS_00057894-exon-scaffold_301-1575043694:31813..31877 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1491911889:32556..32703 | TCONS_00057894-exon-scaffold_301-1491911889:32556..32703 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1510915933:32556..32703 | TCONS_00057894-exon-scaffold_301-1510915933:32556..32703 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1575043694:32556..32703 | TCONS_00057894-exon-scaffold_301-1575043694:32556..32703 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1491911889:32932..34589 | TCONS_00057894-exon-scaffold_301-1491911889:32932..34589 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1510915933:32932..34589 | TCONS_00057894-exon-scaffold_301-1510915933:32932..34589 | Clytia hemisphaerica | exon |
| TCONS_00057894-exon-scaffold_301-1575043694:32932..34589 | TCONS_00057894-exon-scaffold_301-1575043694:32932..34589 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_301 | supercontig | scaffold_301:30652..34589 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
BLAST of TCONS_00057894 vs. Swiss-Prot (Human)
Match: RN168 (E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 4.725e-29 Identity = 50/118 (42.37%), Postives = 77/118 (65.25%), Query Frame = 3
Query: 111 SFTDFLCPICLEILIEPVQMPCKHELCTQCFKSHVEDTSLSCPMCRQRISIWVRRNAKNNTLVNQERWALIQSMFPERVQRRLDGLDDIEDQDNFVPHHNIAEEGEVRKEFEDQMKKI 464
S ++ C IC+EIL+EPV +PC H LC CF+S VE SL CP CR+R+S W R + + N+LVN E W +IQ +P + R G + E D++ P +++ GE+R+E+E+++ K+
Sbjct: 10 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSKPGELRREYEEEISKV 127
The following BLAST results are available for this feature:
|
