TCONS_00057998-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057998-protein
Unique NameTCONS_00057998-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length183

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057998-protein ID=TCONS_00057998-protein|Name=TCONS_00057998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
REVINRKIILLGDSNTGKSSMLKNMQNGPNYLMEQVMGNKYEIKAKSKSK
TYTRITLWDGIVSGYKTDYRPIAYKDTDMIILIYSINSYKTFDSIKTKWL
SEIRKYSPDVDLLVIGNKCDTRLNEDNEKLVSYEDGCKLADDLNAVGFLE
CSAFDEEGMTKVVETLLKSLTIYQPKHSSCALM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036554XLOC_036554Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057998TCONS_00057998Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 108..121
score: 38.09
coord: 6..27
score: 34.25
coord: 148..170
score: 25.29
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 8..169
e-value: 1.9E-12
score: 39.7
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 7..169
e-value: 2.3E-9
score: 7.3
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 3..173
e-value: 5.1E-5
score: -36.0
NoneNo IPR availableGENE3D3.40.50.300coord: 73..171
e-value: 1.5E-21
score: 75.7
NoneNo IPR availableGENE3D3.30.70.1390coord: 4..72
e-value: 1.7E-5
score: 24.2
NoneNo IPR availablePROSITEPS51419RABcoord: 1..183
score: 12.828
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 7..170
e-value: 3.1E-25
score: 88.6
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 6..166
e-value: 1.3E-12
score: 45.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..169

Blast
[Close]
BLAST of TCONS_00057998-protein vs. Swiss-Prot (Human)
Match: RHOC (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.761e-23
Identity = 54/183 (29.51%), Postives = 99/183 (54.10%), Query Frame = 0 
Query:    3 VINRKIILLGDSNTGKSSMLK--NMQNGPNYLMEQVMGN---KYEIKAKSKSKTYTRITLWDGIVSGYKTDY---RPIAYKDTDMIILIYSINSYKTFDSIKTKWLSEIRKYSPDVDLLVIGNKCDTRLNEDN--------EKLVSYEDGCKLADDLNAVGFLECSAFDEEGMTKVVETLLKS 169
             I +K++++GD   GK+ +L   +    P   +  V  N     E+  K        + LWD   +  + DY   RP++Y DTD+I++ +SI+S  + ++I  KW  E++ + P+V ++++GNK D R +E          ++ V  E+G  +A+ ++A G+LECSA  +EG+ +V E   ++
Sbjct:    3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQ-----VELALWD---TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 177
The following BLAST results are available for this feature:
BLAST of TCONS_00057998-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOC4.761e-2329.51Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
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