TCONS_00057998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057998
Unique NameTCONS_00057998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057998 ID=TCONS_00057998|Name=TCONS_00057998|organism=Clytia hemisphaerica|type=transcript|length=572bp
CGAGAAGTGATCAATAGAaaaatcattttgcttggtGACTCCAACACTGG
TAAATCTTCTATGTTAAAGAACATGCAGAATGGACCAAATTACCTCATGG
AGCAAGTTATGGGTAATAAATATGAAATCAAAGCTAAAAGTAAATCCAAA
ACTTACACAAGAATTACACTATGGGATGGAATAGTATCTGGTTATAAAAC
CGATTACAGACCGATCGCTTATAAAGACACTGATATGATCATTTTGATAT
ACTCCATAAACTCTTACAAGACATTCGACAGTATTAAGACGAAATGGTTA
AGTGAAATACGAAAATATAGCCCAGATGTCGACCTACTAGTTATAGGGAA
TAAGTGTGATACCAGGCTAAACGAGGACAATGAAAAGCTTGTTTCGTACG
AAGACGGTTGTAAATTAGCAGACGATTTGAACGCAGTTGGTTTTCTGGAA
TGTTCAGCTTTTGATGAAGAAGGTATGACCAAGGTTGTTGAAACTCTCTT
AAAAAGTTTGACCATATATCAACCGAAGCATAGCAGTTGTGCACTGATGT
GATGCTGATTTATACAAGCACG
Run BLAST on NCBI

protein sequence of TCONS_00057998-protein

>TCONS_00057998-protein ID=TCONS_00057998-protein|Name=TCONS_00057998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
REVINRKIILLGDSNTGKSSMLKNMQNGPNYLMEQVMGNKYEIKAKSKSK
TYTRITLWDGIVSGYKTDYRPIAYKDTDMIILIYSINSYKTFDSIKTKWL
SEIRKYSPDVDLLVIGNKCDTRLNEDNEKLVSYEDGCKLADDLNAVGFLE
CSAFDEEGMTKVVETLLKSLTIYQPKHSSCALM
Run BLAST on NCBI

transcript from alignment at scaffold_302:289841..290412

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057998 ID=TCONS_00057998|Name=TCONS_00057998|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at scaffold_302:289841..290412 (Clytia hemisphaerica)
CGTGCTTGTATAAATCAGCATCACATCAGTGCACAACTGCTATGCTTCGG
TTGATATATGGTCAAACTTTTTAAGAGAGTTTCAACAACCTTGGTCATAC
CTTCTTCATCAAAAGCTGAACATTCCAGAAAACCAACTGCGTTCAAATCG
TCTGCTAATTTACAACCGTCTTCGTACGAAACAAGCTTTTCATTGTCCTC
GTTTAGCCTGGTATCACACTTATTCCCTATAACTAGTAGGTCGACATCTG
GGCTATATTTTCGTATTTCACTTAACCATTTCGTCTTAATACTGTCGAAT
GTCTTGTAAGAGTTTATGGAGTATATCAAAATGATCATATCAGTGTCTTT
ATAAGCGATCGGTCTGTAATCGGTTTTATAACCAGATACTATTCCATCCC
ATAGTGTAATTCTTGTGTAAGTTTTGGATTTACTTTTAGCTTTGATTTCA
TATTTATTACCCATAACTTGCTCCATGAGGTAATTTGGTCCATTCTGCAT
GTTCTTTAACATAGAAGATTTACCAGTGTTGGAGTCaccaagcaaaatga
ttttTCTATTGATCACTTCTCG

Coding sequence (CDS) from alignment at scaffold_302:289841..290412

>TCONS_00057998 ID=TCONS_00057998|Name=TCONS_00057998|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_302:289841..290412 (Clytia hemisphaerica)
TCACATCAGTGCACAACTGCTATGCTTCGGTTGATATATGGTCAAACTTT
TTAAGAGAGTTTCAACAACCTTGGTCATACCTTCTTCATCAAAAGCTGAA
CATTCCAGAAAACCAACTGCGTTCAAATCGTCTGCTAATTTACAACCGTC
TTCGTACGAAACAAGCTTTTCATTGTCCTCGTTTAGCCTGGTATCACACT
TATTCCCTATAACTAGTAGGTCGACATCTGGGCTATATTTTCGTATTTCA
CTTAACCATTTCGTCTTAATACTGTCGAATGTCTTGTAAGAGTTTATGGA
GTATATCAAAATGATCATATCAGTGTCTTTATAAGCGATCGGTCTGTAAT
CGGTTTTATAACCAGATACTATTCCATCCCATAGTGTAATTCTTGTGTAA
GTTTTGGATTTACTTTTAGCTTTGATTTCATATTTATTACCCATAACTTG
CTCCATGAGGTAATTTGGTCCATTCTGCATGTTCTTTAACATAGAAGATT
TACCAGTGTTGGAGTCaccaagcaaaatgattttTCTATTGATCACTTCT
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036554XLOC_036554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057998-exon-scaffold_302-1491911889:289841..290412TCONS_00057998-exon-scaffold_302-1491911889:289841..290412Clytia hemisphaericaexon
TCONS_00057998-exon-scaffold_302-1510915933:289841..290412TCONS_00057998-exon-scaffold_302-1510915933:289841..290412Clytia hemisphaericaexon
TCONS_00057998-exon-scaffold_302-1575043694:289841..290412TCONS_00057998-exon-scaffold_302-1575043694:289841..290412Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057998-proteinTCONS_00057998-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:289841..290412 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.390939	0.762455	0.995943	1.1909	18.4521	14.1645	2.76438	5.41122	12.1892	36.5215	12.2783	19.2669	35.5552	18.631	17.4816	20.6662	16.9483	23.2371	17.9737	36.0943	7.18166	9.26442	9.74929	7.53909	10.3884	13.0174	0.402042	0.572093	0.433912	0.331566
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00057998 vs. Swiss-Prot (Human)
Match: RHOC (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.594e-22
Identity = 54/183 (29.51%), Postives = 99/183 (54.10%), Query Frame = 1 
Query:    7 VINRKIILLGDSNTGKSSMLK--NMQNGPNYLMEQVMGN---KYEIKAKSKSKTYTRITLWDGIVSGYKTDY---RPIAYKDTDMIILIYSINSYKTFDSIKTKWLSEIRKYSPDVDLLVIGNKCDTRLNEDN--------EKLVSYEDGCKLADDLNAVGFLECSAFDEEGMTKVVETLLKS 507
             I +K++++GD   GK+ +L   +    P   +  V  N     E+  K        + LWD   +  + DY   RP++Y DTD+I++ +SI+S  + ++I  KW  E++ + P+V ++++GNK D R +E          ++ V  E+G  +A+ ++A G+LECSA  +EG+ +V E   ++
Sbjct:    3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQ-----VELALWD---TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 177
The following BLAST results are available for this feature:
BLAST of TCONS_00057998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOC3.594e-2229.51Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
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