TCONS_00058010-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058010-protein
Unique NameTCONS_00058010-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058010-protein ID=TCONS_00058010-protein|Name=TCONS_00058010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MEISGYVDHNVSMDAQYGWKLQIVNPDESELWRAIGSQVRFVHVNTSAAI
KVSGSTLPEWGFRQYEVGTDRRINTQESIWNVEEHNQNVTKPEDMSDEEA
KRVLSEHAERYQVSGKTHAMSFFQKFLEYQIKMFKVNNDLTNGHAFASKP
LHWPLMLKGVAYWLDTDTNKQIFIIGNPIVYWLGAISLLIYMALL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036566XLOC_036566Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058010TCONS_00058010Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016093MIR_motif
IPR032421PMT_4TMC
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016093MIR motifSMARTSM00472mir_2coord: 30..85
e-value: 8.9E-4
score: 28.6
IPR016093MIR motifPROSITEPS50919MIRcoord: 30..85
score: 9.851
IPR016093MIR motifSUPERFAMILY82109MIR domaincoord: 2..83
NoneNo IPR availableGENE3D2.80.10.50coord: 1..95
e-value: 5.0E-16
score: 58.1
IPR032421Protein O-mannosyl-transferase, C-terminal four TM domainPFAMPF16192PMT_4TMCcoord: 122..194
e-value: 1.4E-24
score: 86.7

Blast
[Close]
BLAST of TCONS_00058010-protein vs. Swiss-Prot (Human)
Match: POMT1 (Protein O-mannosyl-transferase 1 OS=Homo sapiens GN=POMT1 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 1.022e-37
Identity = 74/196 (37.76%), Postives = 121/196 (61.73%), Query Frame = 0 
Query:    2 EISGYVDHNVSMDAQYGWKLQIVNP-DESELWRAIGSQVRFVHVNTSAAIKVSGSTLPEWGFRQYEVGTDR--RINTQESIWNVEEHNQNVTKPEDMSDEEAKRVLSEHAERYQVSGKTHAMSFFQKFLEYQIKMFKVNNDLTNGHAFASKPLHWPLMLKGVAYWLDTDTNKQIFIIGNPIVYWLGAISLLIYMAL 194
            E+S Y+D+N+SM AQ  W+L+IVN   ++++W+ I S+VRFVHVNTSA +K+SG+ LP+WG+RQ E+  ++  R     ++WNVEEH    ++ +     E +R L   A+       +  +SF  +F E Q +M  + +D +  H ++S PL W  +   +AYWL   T+ QI ++GN +++  G+++L IY  L
Sbjct:  427 EVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKTILSEVRFVHVNTSAVLKLSGAHLPDWGYRQLEIVGEKLSRGYHGSTVWNVEEHRYGASQEQ----RERERELHSPAQ----VDVSRNLSFMARFSELQWRMLALRSDDSE-HKYSSSPLEWVTLDTNIAYWLHPRTSAQIHLLGNIVIWVSGSLALAIYALL 613
The following BLAST results are available for this feature:
BLAST of TCONS_00058010-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POMT11.022e-3737.76Protein O-mannosyl-transferase 1 OS=Homo sapiens G... [more]
back to top