TCONS_00058078-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058078-protein
Unique NameTCONS_00058078-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058078-protein ID=TCONS_00058078-protein|Name=TCONS_00058078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MIDVPFIAMTATATMEMKKFIICNLDLTEPLLLVQSPEKPNIKYNLIELP
HKNIEFIFMPLVNYLKEKFYDADKFIIFCRTIDDTRPIYQLFRQHIKVKN
PTLRPYAKFHAKTEGDLKRFLSKEFTDPKSRIRILMATMAYGMGVDCKGL
YDVIHFGPPKDLDDYFQESGRAGRDGCLSNSTVIKYKRALNPSCLSPEIK
QYCNNQSDCRRKLLLSQFQETPYFPSITPKHQCCDICHRQCDCGTCVNEH
EHPWYIREITDSIQKLRIKCSLNENGKSVLKEKLVAFQSQITSVSKGGLL
NGKFSSGFPDQSIEEIINIASELTTSEMLIEHTSLTNNKFFEEIISQIQE
VLTLPDCKLDNIEELEYFSDNNDLSVESENELNHDASADEIVNDSGSDFS
DDI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036600XLOC_036600Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058078TCONS_00058078Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR011991WHTH_DNA-bd_dom
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 90..176
e-value: 2.1E-9
score: 47.3
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 70..175
e-value: 7.7E-13
score: 48.7
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 64..235
score: 12.555
NoneNo IPR availableGENE3D3.40.50.300coord: 57..208
e-value: 3.5E-17
score: 61.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 379..403
NoneNo IPR availableCDDcd00079HELICccoord: 41..176
e-value: 1.17306E-13
score: 66.1072
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 209..356
e-value: 5.4E-7
score: 29.1
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..31
score: 7.007
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 37..247

Blast
[Close]
BLAST of TCONS_00058078-protein vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.339e-20
Identity = 70/272 (25.74%), Postives = 129/272 (47.43%), Query Frame = 0 
Query:    4 VPFIAMTATATMEMKKFIICNLDLTEPLLLVQSPEKPNIKYNLIELPHKNIEFIFMPLVNYLKEKFYDADKFIIFCRTIDDTRPIYQLFRQHIKVKNPTLRPYAKFHAKTEGDLKRFLSKEFTDPKSRIRILMATMAYGMGVDCKGLYDVIHFGPPKDLDDYFQESGRAGRDGCLSNSTVIKYKRALNPS-----------------CLSPEIKQYCNNQSDCRRKLLLSQFQETPYFPS---ITPKHQCCDICHRQCD-CGTCVNEHEHPW 254
            VP +A+TATA+  +++ I+  L+L  P +     ++PN+ Y  +     NI     P +      +      II+C     +R + Q     ++  N +   Y   HA      ++ +   F   +  I+ ++AT+A+GMG++   +  VIH+G PKD++ Y+QE GRAGRDG  S+  V+     +N +                  +  ++++Y ++ S CRR+++LS F++     +   I    +CCD C  + D C +  +  +  W
Sbjct:  697 VPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNL-YLEVRRKTGNILQDLQPFLVKTSSHWEFEGPTIIYC----PSRKMTQQVTGELRKLNLSCGTY---HAGMSFSTRKDIHHRFV--RDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHS-SRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDHCYSMDDSEDTSW 957
The following BLAST results are available for this feature:
BLAST of TCONS_00058078-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN3.339e-2025.74Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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