TCONS_00058126-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058126-protein
Unique Name	TCONS_00058126-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	592

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058126-protein ID=TCONS_00058126-protein|Name=TCONS_00058126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp
MASINWWGLAGIILFYVVILVIGLLAARYRNKRKQAEGSEGRGEEEVMLA
GRSIGLFVGGFTMTATWVGGGYINGTSEAVNQQGLLWAQSPWGYALSLII
GGVMFAKIMRKRGYITLLDPFQERYGKRVGGIMYFPAFIGELLWSGATLK
SLGATISVVMDLPMSISVIISAFIALVYTFFGGLWSVAFTDVAQLICMFI
GMWLTIPFAMSNDAVHSISLNSTSWTGSWDTETFSTGKWIDFALLLIFGG
IPWQVYFQRVLSSKSHHRAQLLSYFAAFGCMLMAVPSVLIGAIGHSTNWT
MTDYGHLPEDDKDAMRDYYSMTMPLVLQYLTPLPVSFVGLGAVSAAVMSS
VDSSVLSASSMFAHNIYRTIFRQTASEKEMVWVIRISIWVVGAIATTIAL
TVNTIYGLSYLCSDLIYVILFPQLICVLYFRYSNAYGAVISFFVGLILRI
LGGEPMIGLPAAIEYPGFDGTQNFPFRTFSMLVTIFILWSTSIGFHLLFE
KGVLRPEHDVFDAFNGREIHPFNFSDMMVIGGVKVDEGLVDGATEIDGQN
SSCEEKEEKNEKWLNGANGKHEEVELLNKNNNNGQSSAPVIL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036636	XLOC_036636	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058126	TCONS_00058126	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001734	Na/solute_symporter

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001734	Sodium/solute symporter	PFAM	PF00474	SSF	coord: 49..445 e-value: 1.8E-36 score: 125.8
IPR001734	Sodium/solute symporter	PROSITE	PS50283	NA_SOLUT_SYMP_3	coord: 5..459 score: 42.894
None	No IPR available	CDD	cd11474	SLC5sbd_CHT	coord: 9..487 e-value: 0.0 score: 540.189

Blast

[Close]

BLAST of TCONS_00058126-protein vs. Swiss-Prot (Human)
Match: SC5A7 (High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1)

HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 290/547 (53.02%), Postives = 382/547 (69.84%), Query Frame = 0

Query:    8 GLAGIILFYVVILVIGLLAARYRNKRKQAEGSEGRGEEEVMLAGRSIGLFVGGFTMTATWVGGGYINGTSEAV--NQQGLLWAQSPWGYALSLIIGGVMFAKIMRKRGYITLLDPFQERYGKRVGGIMYFPAFIGELLWSGATLKSLGATISVVMDLPMSISVIISAFIALVYTFFGGLWSVAFTDVAQLICMFIGMWLTIPFAMSNDAVHSISLNST------SWTGSWDT-ETFSTGKWIDFALLLIFGGIPWQVYFQRVLSSKSHHRAQLLSYFAAFGCMLMAVPSVLIGAIGHSTNWTMTDYGHLPEDDKDAMRDYYSMTMPLVLQYLTPLPVSFVGLGAVSAAVMSSVDSSVLSASSMFAHNIYRTIFRQTASEKEMVWVIRISIWVVGAIATTIALTVNTIYGLSYLCSDLIYVILFPQLICVLYFRYSNAYGAVISFFVGLILRILGGEPMIGLPAAIEYPGF----DG--TQNFPFRTFSMLVTIFILWSTSIGFHLLFEKGVLRPEHDVFDAFNGREIHPFNFSDMMVIG--GVKVDE 537
            GL  II+FY++IL++G+ AA     R +  GS     E +++ GR IGL VGGFTMTATWVGGGYINGT+EAV     GL WAQ+P GY+LSLI+GG+ FAK MR +GY+T+LDPFQ+ YGKR+GG+++ PA +GE+ W+ A   +LGATISV++D+ M ISVIISA IA +YT  GGL+SVA+TDV QL C+F+G+W+++PFA+S+ AV  I   +        W G+ D+ E +S   W+D  LLL+ GGIPWQ YFQRVLSS S   AQ+LS+ AAFGC++MA+P++LIGAIG ST+W  T YG LP+       D   M +P+VLQYL P+ +SF GLGAVSAAVMSS DSS+LSASSMFA NIY+  FRQ AS+KE+VWV+RI+++V GA AT +AL   T+YGL YL SDL+Y+++FPQL+CVL+ + +N YGAV  +  GL LRI GGEP + L   I YPG+    +G   Q FPF+T +M+ +       S     LFE G L P+ DVFDA   R     N    +++    +K+DE
Sbjct:    7 GLIAIIVFYLLILLVGIWAAW----RTKNSGSAEERSEAIIVGGRDIGLLVGGFTMTATWVGGGYINGTAEAVYVPGYGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIIDVDMHISVIISALIATLYTLVGGLYSVAYTDVVQLFCIFVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYS---WLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTDWNQTAYG-LPDPKTTEEAD---MILPIVLQYLCPVYISFFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPDDNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSEE-NMDKTILVKNENIKLDE 541

The following BLAST results are available for this feature:

BLAST of TCONS_00058126-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058126-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5A7	0.000e+0	53.02	High affinity choline transporter 1 OS=Homo sapien...	[more]

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TCONS_00058126-protein (polypeptide) - C. hemisphaerica