TCONS_00058162-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058162-protein
Unique Name	TCONS_00058162-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	700

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058162-protein ID=TCONS_00058162-protein|Name=TCONS_00058162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=700bp
ELDRVYNEDQLYFIEDNWSTIIHDDYFTARMKEQQAVIWEMIKTESNYIC
RMKLILMVFQQIFRIAQREGELTNIKREEIFANIDQVFLANDEIWKKYFI
EIVKKARIKRGPIKPSELLAPFHMVEELYKPYVEFFLKQESCLNRIRDYS
DPNKESCDKMFRAYLNFCENLPQCRRYELVSLMTEPMQRITRYPLLMQSI
KKATDNVKEKEQLEILIQKMGSFIRKINTRIRKIDETKALSKVLDEFEDY
NTWSAGNEDVLWPCVDFLRGDIEHLPTREQRCYLTREKVKILDKKGKSEM
NIEMILFTDVIVFSRRRSSSKKLVVAKQLHFLDKVQFHKSEVSATSLVVI
YLDEYGMLANSMMIEMTEESRDVWMEAVSKAQDRYEKAKSGTGSTLEFFQ
DSRGINDDEIHGIKPPRKTSELINSVEVTRRSSVSVNNAKNTEKYTEKSI
EKKDEKNTAPELPPKTRKTSTASNSQEKSPKSPVKSYDNRAQDLEEDTPG
LNRRSASWLLTDEKRVKSIRCLLREDLWGAGRPKVRSSSSFRSDISDSEC
ENTGDYRDSPDVCSLSSVDSGPQMTSDNQSDLSRNNSRKNLLKPNNTKLN
LNSPTDNNEARKSPCRKVSSSSTGLPEIAEHIYAEITFMSRDQVTDKNQR
RSLKSDSNNNLKTPSPKTKVKVDKPFEDVFTDSSGSSLNGDYVDDYLENN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036647	XLOC_036647	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058162	TCONS_00058162	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000219	DH-domain
IPR011993	PH_dom-like

Vocabulary: **Biological Process**
Term	Definition
GO:0035023	regulation of Rho protein signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005089	Rho guanyl-nucleotide exchange factor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035023	regulation of Rho protein signal transduction
molecular_function	GO:0005089	Rho guanyl-nucleotide exchange factor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000219	Dbl homology (DH) domain	SMART	SM00325	RhoGEF_3	coord: 37..229 e-value: 8.9E-19 score: 78.4
IPR000219	Dbl homology (DH) domain	PFAM	PF00621	RhoGEF	coord: 37..228 e-value: 2.1E-24 score: 86.7
IPR000219	Dbl homology (DH) domain	PROSITE	PS50010	DH_2	coord: 33..230 score: 23.869
IPR000219	Dbl homology (DH) domain	SUPERFAMILY	48065	DBL homology domain (DH-domain)	coord: 28..248
None	No IPR available	GENE3D	1.20.900.10		coord: 14..249 e-value: 2.9E-32 score: 111.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 643..700
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 532..623
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 406..499
None	No IPR available	CDD	cd00160	RhoGEF	coord: 34..228 e-value: 7.58264E-23 score: 95.8276
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 268..388 e-value: 1.0E-8 score: 34.9
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 297..384

Blast

[Close]

BLAST of TCONS_00058162-protein vs. Swiss-Prot (Human)
Match: PKHG5 (Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens GN=PLEKHG5 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 8.004e-45
Identity = 99/384 (25.78%), Postives = 204/384 (53.12%), Query Frame = 0

Query:   14 IEDNWSTII-HDDYFTARMKEQQAVIWEMIKTESNYICRMKLILMVFQQIFRIAQREGELTNIKREEIFANIDQVFLANDEIWKKYFIEIVKKARIKRGPIKPSELLAPFHMVEELYKPYVEFFLKQESCLNRIRDYSDPNKESCDKMFRAYLNFCENLPQCRRYELVSLMTEPMQRITRYPLLMQSIKKATDNVKEKEQLEILIQKMGSFIRKINTRIRKIDETKALSKVLDEFEDYNTWSAGNEDVLWPCVDFLRGD----IEHLPTREQRCYLTREKVKILDKKGK-SEMNIEMILFTDVIVFSRRRSSSKKLVVAKQLHFLDKVQFHKSEVSATSLVVIYLDEYGMLANSMMIEMTEESR-DVWMEAVSKAQDRYEKAKS 390
            +ED+W  +I   +  T R   QQ  +WE++ TE++YI ++++I+ +F       Q  G L  ++ E +F+NI ++   +  +W      +++KAR  R  ++P + L  F M   L+KPY+ + +++E C+  +R     N      +FRAY+ + E  PQC+R +L  ++ +P QR+T+YPLL++S+ + T+  + KE +  +I  +  FI  +N  +R+  E + L+ V+   + Y    + +++V     +FL  D    I      E R  L    +++  K+GK S+M++   LFTD+++ ++    +++  V +    +DK+   +      S ++IYL+E+     +   + + ++    W++ +  AQ++ ++ ++
Sbjct:  372 LEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIRKLRVIINLFLCCLLNLQESGLLCEVEAERLFSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDN-----DLFRAYITWAEKHPQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVESSSDEVDKLLKEFLHLDLTAPIPGASPEETRQLLLEGSLRM--KEGKDSKMDVYCFLFTDLLLVTKAVKKAERTRVIRPPLLVDKIVCRELR-DPGSFLLIYLNEFHSAVGAYTFQASGQALCRGWVDTIYNAQNQLQQLRA 747

The following BLAST results are available for this feature:

BLAST of TCONS_00058162-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058162-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PKHG5	8.004e-45	25.78	Pleckstrin homology domain-containing family G mem...	[more]

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TCONS_00058162-protein (polypeptide) - C. hemisphaerica