TCONS_00058184-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058184-protein
Unique Name	TCONS_00058184-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	829

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058184-protein ID=TCONS_00058184-protein|Name=TCONS_00058184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=829bp
MADNGLSATEILSLASKMVGDDTMRESPQEFLNILNYLTPGQLAKFYNVA
NETMERFVNHTVPCIEDTIQENLNIMNGTELWEPIWKDCFFWAPTPTPSS
GPAPGEVICESMGITPIIRLTLFGLSILLLTFMTFFVQKRRRACRDCCWG
FPGPVVPLNMLDSFENRKGYMMAFGLAANSIVDVIFGENSEMIGHDLSKQ
IDGQLKNYSFLSIFMKIFLSVYVAMMSYPFFVAQNVRNKMIGSTFGILIS
TYWLAFELYKFIAYGGSCFKQINEQEGYGRSILYVLFDMPKLICLAGLVL
KFAYNIFVTLEKRSEKKRQGKHVNWVYENDTNWKEEYMYIHIKEVFKKHR
IAKEEKRLKRLGKVEEESPFLQRMKTKIRGMMYEVKPGFQYGTRFCVSLC
IAVLAVYGIMCFSIGLGIVIFVKLLNQLIDNVDGVQWLSDNIKVAKQDII
DYGNALGTSYWLAMMTSVILFALVMMNQMTWYRRHVIKLRSGDRSFLPSG
IQKKTLAPARLMTASFKYAGFQVGYCIWGFLLSFFVFYIGWMVIVTQFIL
PMKRHELSLLLTLLIKQWPNILIAITMIVLQMLIARCCFVASPDSLAIDN
RRAYHIFSYFMLFFNIFFGLVSCLLRIIIGLVLGVVFMQRLSKSTLPRSY
ERRDRGYLSYVSFLLLEHQHSNPALQCFVRFLLEDMKKDLKDDFFKNEQV
NNSQSLCMELIKIDNTVAKKAKEARNKHIRARNRWHLFVTMTMNPSIIKY
RIRFLDVNIESSILSDKMKNLLDEGPNMKIKDDNDDKSRPSSSLSLRQRQ
GKVSHAYSNEEIDENYYVFKGEVEKPVIA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036665	XLOC_036665	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058184	TCONS_00058184	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14752	RBP_receptor	coord: 121..751 e-value: 1.6E-97 score: 327.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 774..802

Blast

[Close]

BLAST of TCONS_00058184-protein vs. Swiss-Prot (Human)
Match: STRA6 (Stimulated by retinoic acid gene 6 protein homolog OS=Homo sapiens GN=STRA6 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.213e-19
Identity = 86/403 (21.34%), Postives = 174/403 (43.18%), Query Frame = 0

Query:  359 KRLGKVEEESP--FLQRMKTKIRGMMYEVKPGFQYGTRFCVSLCIAVLAVYGIMCFSIGLGIVIFVKLLNQLIDNVD------GVQWLSDNIKVAKQDIIDYGNALGTSYWLAMMTSVILFALVMMNQMTWYRRHVIKLRSGDRSFLPSGIQKKTLAPARLMTASFKYAGFQVGYCIWGFLLSFFVFYIGWMVIVTQFILPMKRHELSLLLTLLIKQWPNILIAITMIVLQMLIARCCFVASPDSLA-IDNRRAYHIFSYFMLFFNIFFGLVSCLLRIIIGLVLGVVFMQRLSKSTLPRSYERRDRGYLSYVSFLLLEHQHSNPALQCFVRFLLEDMKKDLKDDFFKNEQVN-NSQSLCMELIKIDNTVAKKAKEARNKHIRARNRWHLFVTMTMNPSIIKYR 751
            K+LG     S   FL   +  +R  +Y  +PGF    +  +S  +   A+Y +    +   +    K+   +  +V       G+  LS++ +   + +  +  AL   Y  A++ S +L  LV+M  +  +R ++  L  G    L S + +      + +     ++ +Q  +   G L+   +F++G   +    ++P+      LL   L   WP  L     ++LQ + A   F+ + D    + NRR  +  ++ +   N+  G +    R+++  +   + + ++  S LP      D GY +Y +FL +E   S+PA+  F   LL+      +      + +    +   M+L++  +++AK A+   +   R R RW L  T+  NP++  +R
Sbjct:  258 KKLGSSYHTSKHGFLSWARVCLRHCIYTPQPGFHLPLKLVLSATLTGTAIYQVALLLLVGVVPTIQKVRAGVTTDVSYLLAGFGIV-LSEDKQEVVELVKHHLWALEVCYISALVLSCLLTFLVLMRSLVTHRTNLRALHRGAALDL-SPLHRSPHPSRQAIFCWMSFSAYQTAFICLGLLVQQIIFFLGTTALAFLVLMPVLHGRNLLLFRSLESSWPFWLTLALAVILQNMAAHWVFLETHDGHPQLTNRRVLYAATFLLFPLNVLVGAMVATWRVLLSALYNAIHLGQMDLSLLPPRAATLDPGYYTYRNFLKIEVSQSHPAMTAFCSLLLQAQSLLPRTMAAPQDSLRPGEEDEGMQLLQTKDSMAKGARPGAS---RGRARWGLAYTLLHNPTLQVFR 655

The following BLAST results are available for this feature:

BLAST of TCONS_00058184-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058184-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STRA6	2.213e-19	21.34	Stimulated by retinoic acid gene 6 protein homolog...	[more]

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TCONS_00058184-protein (polypeptide) - C. hemisphaerica