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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00058201-protein ID=TCONS_00058201-protein|Name=ARNT|organism=Clytia hemisphaerica|type=polypeptide|length=750bp
MMHQGFGGGGGGGPGNYRKRTKPTGLRGDGSDDDDHFNGGKPKNARFESK
EQSKERFARENHSEIERRRRNKMNAYINELSDMVPSCNGLIRKPDKLTIL
KMAVSYMKSLKGDPSAPEGSFKPTFLSDQELKHLVLEAADGFLFAVDCSS
GNILYVSDSVTPVLNQSQNEWINKSFYDVIHPEDINKIKDQLNTEVSNDT
RILDLKTGNVRTDGNSPANSLANGSRRNFIVRMKCGNYEGDCEDVDAHLM
EIKNRCKEKRISYKDEAYSVVHCTGYIRDANQLHDTEDEMMQQIQSDKGD
LGGGELCLVAIGRLQPTSMPTSKDLIESAPATEFITRQTLDGRFSFVDQR
VTEILGYRPIDLLGKLCYEFYSENDVDHMKESFEQVLKLKGQPLSIRYHF
KHMNGELVAMRSSCYSFQNPYTDEAEYIVCTNNLIKSKTESQYNVSSSGM
DSIDGGSGLNFNNTSNNANTSGASGELDVTSIIQEKPGMYAYPYRVQPND
TGKSQQGVSILESQLGTESTTPPSRNINKRKASTSSTIRSQQQLQAGSSV
TSTSPQSNLGKYANNSGVSSNNGNDQYMQDMYQQSEASDVLANMARKHQH
EEPPAPNSYSSSSDWNTAMQQQSRYNYPPNMNTQQMGGESNTPVDPLQGM
YQSSVPPRNSRDLISNAQQNSRDLLQPNSMQNSRDLISNAPPDMAARGYM
NNYNDQRLFAQSGAGGNDMGGNPQMQQQSGNRMNPNYPQSYSSGGEFPYQ Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0005634 | nucleus |
| GO:0005667 | transcription factor complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005737 |
cytoplasm |
| cellular_component |
GO:0005634 |
nucleus |
| cellular_component |
GO:0005667 |
transcription factor complex |
| molecular_function |
GO:0046983 |
protein dimerization activity |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001067 | Nuclear translocator | PRINTS | PR00785 | NCTRNSLOCATR | coord: 121..144
score: 79.86
coord: 223..236
score: 61.11
coord: 72..87
score: 72.57
coord: 146..165
score: 66.11
coord: 178..196
score: 45.03
coord: 92..112
score: 75.13
coord: 306..322
score: 61.11
coord: 333..350
score: 54.32 |
| IPR000014 | PAS domain | SMART | SM00091 | pas_2 | coord: 130..197
e-value: 1.5E-11
score: 54.4
coord: 320..388
e-value: 1.4E-6
score: 37.9 |
| IPR000014 | PAS domain | TIGRFAM | TIGR00229 | TIGR00229 | coord: 325..414
e-value: 1.7E-6
score: 26.1 |
| IPR000014 | PAS domain | PROSITE | PS50112 | PAS | coord: 318..390
score: 13.773 |
| IPR000014 | PAS domain | PROSITE | PS50112 | PAS | coord: 128..199
score: 16.348 |
| IPR000014 | PAS domain | CDD | cd00130 | PAS | coord: 331..429
e-value: 1.28727E-11
score: 61.1099 |
| IPR000014 | PAS domain | CDD | cd00130 | PAS | coord: 139..198
e-value: 1.4101E-9
score: 54.9467 |
| IPR000014 | PAS domain | SUPERFAMILY | 55785 | PYP-like sensor domain (PAS domain) | coord: 140..237 |
| IPR000014 | PAS domain | SUPERFAMILY | 55785 | PYP-like sensor domain (PAS domain) | coord: 333..433 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | SMART | SM00353 | finulus | coord: 63..116
e-value: 3.1E-16
score: 69.9 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | GENE3D | 4.10.280.10 | | coord: 47..113
e-value: 1.2E-18
score: 66.2 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | PFAM | PF00010 | HLH | coord: 59..110
e-value: 1.1E-15
score: 57.3 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | PROSITE | PS50888 | BHLH | coord: 57..110
score: 17.854 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | CDD | cd00083 | HLH | coord: 59..111
e-value: 6.92384E-15
score: 69.5503 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | SUPERFAMILY | 47459 | HLH, helix-loop-helix DNA-binding domain | coord: 50..112 |
| IPR013767 | PAS fold | PFAM | PF00989 | PAS | coord: 134..196
e-value: 1.1E-9
score: 38.1 |
| None | No IPR available | PFAM | PF14598 | PAS_11 | coord: 333..438
e-value: 5.9E-17
score: 61.7 |
| None | No IPR available | GENE3D | 3.30.450.20 | | coord: 332..601
e-value: 1.6E-18
score: 66.3 |
| None | No IPR available | GENE3D | 3.30.450.20 | | coord: 126..315
e-value: 2.4E-33
score: 114.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 709..750 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..67 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 513..576 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 594..663 |
Blast
BLAST of ARNT vs. Swiss-Prot (Human)
Match: ARNT (Aryl hydrocarbon receptor nuclear translocator OS=Homo sapiens GN=ARNT PE=1 SV=1) HSP 1 Score: 423.32 bits (1087), Expect = 3.965e-137 Identity = 213/418 (50.96%), Postives = 285/418 (68.18%), Query Frame = 0
Query: 33 DDDHFNGGKPKNARFESKEQS--KERFARENHSEIERRRRNKMNAYINELSDMVPSCNGLIRKPDKLTILKMAVSYMKSLKGDP-SAPEGSFKPTFLSDQELKHLVLEAADGFLFAVDCSSGNILYVSDSVTPVLNQSQNEWINKSFYDVIHPEDINKIKDQLNTEVSNDT-RILDLKTGNVRTDGNSPANSLANGSRRNFIVRMKCGNYEGDCEDVDAHLMEIKNRCKEKRISYKD--EAYSVVHCTGYIRD----ANQLHDTEDEMMQQIQSDKGDLGGGELCLVAIGRLQPTSMPTSKDLIESAPATEFITRQTLDGRFSFVDQRVTEILGYRPIDLLGKLCYEFYSENDVDHMKESFEQVLKLKGQPLSIRYHFKHMNGELVAMRSSCYSFQNPYTDEAEYIVCTNNLIKSKTE 440
DDD + K + AR + ++ S KER ARENHSEIERRRRNKM AYI ELSDMVP+C+ L RKPDKLTIL+MAVS+MKSL+G ++ +GS+KP+FL+DQELKHL+LEAADGFLF V C +G ++YVSDSVTPVLNQ Q+EW + YD +HP+D++K+++QL+T + T RILDLKTG V+ +G + + GSRR+FI RM+CG+ D V+ L ++NRC+ S KD + VVHCTGYI+ L D + E Q G + CLVAIGRLQ TS P D+ TEFI+R ++G F+FVD R +GY+P +LLGK EF D +++SF+QV+KLKGQ LS+ + F+ N E + MR+S ++FQNPY+DE EYI+CTN +K+ ++
Sbjct: 63 DDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVN-RLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQ----------GSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 469
The following BLAST results are available for this feature:
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