TCONS_00058273-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058273-protein
Unique NameTCONS_00058273-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length183

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058273-protein ID=TCONS_00058273-protein|Name=TCONS_00058273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
QKHCTERNDISDPSSLMKLANQSITARACMSVYYEMFIMICSAAKNKIVK
MSGRGKGGKSKTKAKSRSSRAGLQFPVGRIHRFLRKGHYASRVGSGAPVY
LAAVLEYLSAEILELAGNAARDNKKRRIVPRHLQLAVRNDEELNKLLSGV
TIAAGGVLPNINALLLPKKSKEAKGKNSQSQEY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036708XLOC_036708Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058273TCONS_00058273Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR032454Histone_H2A_C
IPR007125Histone_H2A/H2B/H3
IPR032458Histone_H2A_CS
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 149..167
score: 73.73
coord: 63..85
score: 77.52
coord: 121..135
score: 78.35
coord: 92..107
score: 86.55
coord: 107..120
score: 87.21
IPR002119Histone H2ASMARTSM00414h2a4coord: 53..172
e-value: 7.3E-79
score: 278.0
NoneNo IPR availableGENE3D1.10.20.10coord: 52..174
e-value: 2.9E-61
score: 204.3
NoneNo IPR availableCDDcd00074H2Acoord: 57..169
e-value: 5.18707E-71
score: 212.195
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 141..174
e-value: 2.2E-18
score: 65.6
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 56..138
e-value: 2.1E-16
score: 60.4
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 71..77
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 53..170

Blast
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BLAST of TCONS_00058273-protein vs. Swiss-Prot (Human)
Match: H2AX (Histone H2AX OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 6.044e-73
Identity = 106/131 (80.92%), Postives = 116/131 (88.55%), Query Frame = 0 
Query:   51 MSGRGK-GGKSKTKAKSRSSRAGLQFPVGRIHRFLRKGHYASRVGSGAPVYLAAVLEYLSAEILELAGNAARDNKKRRIVPRHLQLAVRNDEELNKLLSGVTIAAGGVLPNINALLLPKKSKEAKGKNSQS 180
            MSGRGK GGK++ KAKSRSSRAGLQFPVGR+HR LRKGHYA RVG+GAPVYLAAVLEYL+AEILELAGNAARDNKK RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNI A+LLPKK+    G  + S
Sbjct:    1 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVGPKAPS 131
The following BLAST results are available for this feature:
BLAST of TCONS_00058273-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2AX6.044e-7380.92Histone H2AX OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
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