TCONS_00058316-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058316-protein
Unique NameTCONS_00058316-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058316-protein ID=TCONS_00058316-protein|Name=TCONS_00058316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp
MSGIVRKSKFRNTYGTEVKKEFWYENIRPSNCAFDGTFIACNGKFVAFCV
EVGGAGAFTVIPVSKAGRLDTDLPKVSAHREYILDIKWNPFDDSMLATSC
EDGSIRLWQFSDHGLLSNIDESKALLTFQLHQRRCTQISWHPIVENVLMS
VSQEPQIAIWNLDNGEAERVINAPKVIHFAEWSIKGDKIVTTDKEKMIRI
YDARSGEELMSCKGHEGQKPQRVVFTFDDTMLFSCGFSKMSERQYAAWSV
TDKIKQLDIGELDSSNGTLNPIYDPDTQMVYVVAKGDSVIRYYELVKEDP
YFHYITTFQSKDVQKGFTTIPKRCVDVNSCEVMKFYKIVAGSGNKPALIK
PISFTVPRKSELYQDDLYPDAISNESSCDEPSEWFSGTNFEPKRISMSQF
FKGAVTPSSSAGGGLKKGGLKGLKAKKESKAAGKPAAAPSPTPSEEKSSP
TPVAKSAPVSSAPSASSPAPSSGGVDKDYVAGLEKEIKGLKVSNKEMEKE
IKSLNDKLKDFDKLSGDVKLLCDAVKKNNERLTSLEALVEEGDDEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036730XLOC_036730Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058316TCONS_00058316Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015048DUF1899
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 480..514
NoneNo IPR availableSMARTSM01167DUF1900_2coord: 256..397
e-value: 4.4E-66
score: 235.5
NoneNo IPR availableGENE3D1.20.1170.10coord: 402..542
e-value: 1.8E-4
score: 20.0
NoneNo IPR availablePFAMPF16300WD40_4coord: 349..392
e-value: 9.3E-16
score: 57.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..477
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 121..161
e-value: 0.41
score: 19.4
coord: 66..109
e-value: 4.2E-5
score: 33.0
coord: 205..249
e-value: 230.0
score: 2.2
coord: 164..202
e-value: 16.0
score: 9.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 128..170
score: 9.205
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 76..118
score: 11.812
IPR015048Domain of unknown function DUF1899SMARTSM01166DUF1899_3coord: 3..67
e-value: 4.1E-27
score: 106.1
IPR015048Domain of unknown function DUF1899PFAMPF08953DUF1899coord: 4..68
e-value: 1.7E-24
score: 85.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 75..347
e-value: 2.2E-32
score: 111.9
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 76..170
score: 15.188
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 42..303

Blast
[Close]
BLAST of TCONS_00058316-protein vs. Swiss-Prot (Human)
Match: CORO6 (Coronin-6 OS=Homo sapiens GN=CORO6 PE=1 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 1.093e-111
Identity = 192/508 (37.80%), Postives = 281/508 (55.31%), Query Frame = 0 
Query:    4 IVRKSKFRNTYGTEVKKEFWYENIRPSNCAFDGTFIACNGKFVAFCVEVGGAGAFTVIPVSKAGRLDTDLPKVSAHREYILDIKWNPFDDSMLATSCEDGSIRLWQFSDHGLLSNIDESKALLTFQLHQRRCTQISWHPIVENVLMSVSQEPQIAIWNLDNGEAERVIN--APKVIHFAEWSIKGDKIVTTDKEKMIRIYDARSGEELM-SCKGHEGQKPQRVVFTFDDTMLFSCGFSKMSERQYAAWSVTDKIKQLDIGELDSSNGTLNPIYDPDTQMVYVVAKGDSVIRYYELVKEDPYFHYITTFQSKDVQKGFTTIPKRCVDVNSCEVMKFYKIVAGSGNKPALIKPISFTVPRKSELYQDDLYPDAISNESSCDEPSEWFSGTNFEPKRISMSQFFKGAVTPSSSAGGGLKKGGLKGLKAKKESKAAGKPAAAPSPTPSEEKSSPTPVAKSAPVSSAPSASSPAPSSGGVDKDYVAGLEKEIKGLKVSNKEMEKEIKSLNDKL 508
            +VR+SKFR+ +G   K +  YE+IR S   +D +F A N KF+A  VE GG GAF V+P++K GR+D + P V+ H   +LDI W P +D+++A++ +D +I +WQ  D+  + NI E   ++T + H +R   +SWHP   NVL+S   +  I IWN+  GE    ++   P VIH   W+  G  + TT K+K +RI D R G+ +    + HEG +P R VFT D  +L S GFS+MSERQ A W   +  + + + E+D+SNG L P YDPD+ +VY+  KGDS IRY+E+  E P+ HY+ TF SK+ Q+G   +PKR +DV+ CE+ +FYK+           +PI  TVPRKS+L+QDDLYPD    E +  E  EW SG + EP  IS+     G V P             + L+  K +    +P + P  + S         A  AP+S                +  +  L +EIK L+   +  E+ I +L + L
Sbjct:    5 VVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITE--PIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKGQVVAEQARPHEGARPLRAVFTADGKLL-STGFSRMSERQLALWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITDEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERK------CEPIIMTVPRKSDLFQDDLYPDTPGPEPAL-EADEWLSGQDAEPVLISLRD---GYVPPKH-----------RELRVTKRNILDVRPPSGPRRSQS---------ASDAPLSQ---------------QHTLETLLEEIKALRERVQAQEQRITALENML 464
The following BLAST results are available for this feature:
BLAST of TCONS_00058316-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CORO61.093e-11137.80Coronin-6 OS=Homo sapiens GN=CORO6 PE=1 SV=2[more]
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