TCONS_00058672-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058672-protein
Unique Name	TCONS_00058672-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	282

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058672-protein ID=TCONS_00058672-protein|Name=TCONS_00058672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
LINFVPSAVTPPSTTGTLLDIASEPSPVNNGGISLDFPTSTTPATNDSVS
KFICKSNGILFENDIIQIGIKSEYRQGVGRLGIFYGNKTTVPLTNFLVQL
HNNPDVSQKMAVELQPISNVIDNGAQIQQMIKCEIIDVFDEIPVLTVSFS
VGTAPQQLLLQLPVFLTKCSVSAEMTNTDFFNRWKGLSAPGQESQKIFNA
NFPIDTEASKLKLVGCSMGLLEEIDPNPDNFVTAGIIHTRQGQIGYLLRL
EPNIPAQMYRLTIRASRAGVADILTNVLQDQF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036961	XLOC_036961	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058672	TCONS_00058672	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008152	Clathrin_a/b/g-adaptin_app_Ig
IPR003164	Clathrin_a-adaptin_app_sub_C
IPR009028	Coatomer/calthrin_app_sub_C
IPR013041	Coatomer/clathrin_app_Ig-like

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0006886	intracellular protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0030131	clathrin adaptor complex
GO:0030117	membrane coat

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030131	clathrin adaptor complex
cellular_component	GO:0030117	membrane coat

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008152	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	SMART	SM00809	alpha_adaptinc2	coord: 50..163 e-value: 3.0E-21 score: 86.6
IPR008152	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	PFAM	PF02883	Alpha_adaptinC2	coord: 57..158 e-value: 3.2E-17 score: 62.7
None	No IPR available	GENE3D	2.60.40.1230		coord: 38..169 e-value: 3.1E-42 score: 143.3
None	No IPR available	GENE3D	3.30.310.10		coord: 171..282 e-value: 5.4E-34 score: 116.2
IPR003164	Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain	PFAM	PF02296	Alpha_adaptin_C	coord: 173..276 e-value: 6.5E-34 score: 116.4
IPR009028	Coatomer/calthrin adaptor appendage, C-terminal subdomain	SUPERFAMILY	55711	Subdomain of clathrin and coatomer appendage domain	coord: 173..282
IPR013041	Coatomer/clathrin adaptor appendage, Ig-like subdomain	SUPERFAMILY	49348	Clathrin adaptor appendage domain	coord: 45..168

Blast

[Close]

BLAST of TCONS_00058672-protein vs. Swiss-Prot (Human)
Match: AP2A2 (AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP2A2 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 5.468e-76
Identity = 117/240 (48.75%), Postives = 160/240 (66.67%), Query Frame = 0

Query:   43 PATNDSVSKFICKSNGILFENDIIQIGIKSEYRQGVGRLGIFYGNKTTVPLTNFLVQLHNNPDVSQKMAVELQPISNVIDNGAQIQQMIKCEIIDVFDEIPVLTVSFSVGTAPQQLLLQLPVFLTKCSVSAEMTNTDFFNRWKGLSAPGQESQKIFNANFPIDTEASKLKLVGCSMGLLEEIDPNPDNFVTAGIIHTRQGQIGYLLRLEPNIPAQMYRLTIRASRAGVADILTNVLQDQF 282
            P + D+ ++F+CK+NG+LFEN ++QIG+KSE+RQ +GR+ IFYGNKT+    NF   L  + D+   + ++ +P+   ++ GAQ+QQ++  E +  F E PVL + F  G   Q + +QLP+ L K     EM + DFF RWK LS P QE Q IF A  P+DTE +K K++G    LLEE+DPNP NFV AGIIHT+  QIG LLRLEPN+ AQMYRLT+R S+  V+  L  +L  QF
Sbjct:  700 PGSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICSDDLQPNLNLQTKPVDPTVEGGAQVQQVVNIECVSDFTEAPVLNIQFRYGGTFQNVSVQLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEVTKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKEAVSQRLCELLSAQF 939

The following BLAST results are available for this feature:

BLAST of TCONS_00058672-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058672-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AP2A2	5.468e-76	48.75	AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP...	[more]

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TCONS_00058672-protein (polypeptide) - C. hemisphaerica