TCONS_00058706-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058706-protein
Unique NameTCONS_00058706-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length191

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058706-protein ID=TCONS_00058706-protein|Name=TCONS_00058706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MVTDQFGMIGLLTFIRAAETEPNLVTLALGSDLTTLGLNLNSTESLYHTF
GSPFSDSTCKPHEIDFYAPPEYLISSYIRDKLAPIKLGRYGEDLLFYLYY
TNCGDILQLAAAAELYARDWRYHKDERVWITRFPGMDPQVKMSTYERGTY
YYFDPQGWRKVAKEFHVEYERLEEKPTVQALQQQAAAQQQH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036985XLOC_036985Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058706TCONS_00058706Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007282NOT
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007282NOT2/NOT3/NOT5PFAMPF04153NOT2_3_5coord: 48..172
e-value: 3.7E-29
score: 101.3

Blast
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BLAST of TCONS_00058706-protein vs. Swiss-Prot (Human)
Match: CNOT2 (CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 1.214e-95
Identity = 133/189 (70.37%), Postives = 156/189 (82.54%), Query Frame = 0 
Query:    1 MVTDQFGMIGLLTFIRAAETEPNLVTLALGSDLTTLGLNLNSTESLYHTFGSPFSDSTCKPHEIDFYAPPEYLISSYIRDKLAPIKLGRYGEDLLFYLYYTNCGDILQLAAAAELYARDWRYHKDERVWITRFPGMDPQVKMSTYERGTYYYFDPQGWRKVAKEFHVEYERLEEKPTVQALQQQAAAQQ 189
            MVTDQFGMIGLLTFIRAAET+P +V LALGSDLTTLGLNLNS E+LY  F SP++ S C+P +IDF+ P EYL + +IRDKLA IKLGRYGEDLLFYLYY N GD+LQL AA EL+ RDWRYHK+ERVWITR PGM+P +K +TYERGTYY+FD   WRKVAKEFH+EY++LEE+P + +      AQQ
Sbjct:  350 MVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQ 538
The following BLAST results are available for this feature:
BLAST of TCONS_00058706-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT21.214e-9570.37CCR4-NOT transcription complex subunit 2 OS=Homo s... [more]
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