TCONS_00058710-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058710-protein
Unique NameTCONS_00058710-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length919

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058710-protein ID=TCONS_00058710-protein|Name=TCONS_00058710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=919bp
MEVMYFCFLVILGILQTSSIVFCTTYNIGVLINNATLEENVLNAKDDIND
NPSLHGLGASSRLNVTVLMLPSDPVQATKDICSHLISKSVYVVITTNAQN
STHSPDIVSYACAFYKIPTIAVQSRNTELSDKNLHPSLLRTVPAYADQAR
VWADLIRHFKWNKVNLLTSDDYDSRVTYIKFTSWAYKFSIVIERPIMFPA
HQKNLTSFLSPLNGTQSKVLLLACSAEDAVTVFRTARALDLTGESYIWIT
NQQALSSQEGFDLAPQGLLSLRLYDEEKVEGHLRDAFMVTANAIGRLQRT
HQLNDPPPNSCDEPSGKWTTGDDLYEALVNTTVQGSTGTVTFDPYGDRKT
PAYELLNVRENKDGTKFNKEVGVLDGNEAVSVDLKDIIWPGNQTDAPTGV
FISNHLRIVTVESKPFVYVVERPASGDCSELDGENGRTQKHLPCTGPSSK
FPNTRDHCCKGFCMDLLVKLAEKVNFTYDLHLVEDGNFGSLQRVNGSNIK
RWNGLIGEVIEGKADLIVTSLTINNERAQYIEFSKPFKYQGITILVKKNT
NKSDLSSFLRPFKPELWLLVLLSVHVVAVILYLLDRFSPFGRYRLAQSNK
EETALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVAS
YTANLAAFLVLDRPKPVVTGVDDPNLRNPSDLFKYATVAKSSVDAYFRRQ
VELSSMYTFMEKHNVKTEQEGIEKVKNGELKAFIWDSPVLFHETSQNCDV
STVGDLFGRSGYGIGMPKGSPWSNEISLAVLHFHESGAMEELESTWIDFG
NCQSDSNSPTTLGLQHMLGVFIMVAAGIGAGIVIVILEVLYYKHKGWRKQ
QQKVIKKTTEQWQEHVQERKHQTGGNENSSRSRSRASKSSKENGVDHLGN
GNNPAGFKNPIYDVETSAP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036988XLOC_036988Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058710TCONS_00058710Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001508Iono_rcpt_met
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
IPR001828ANF_lig-bd_rcpt
IPR028082Peripla_BP_I
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0004872receptor activity
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0005216 ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
molecular_function GO:0004872 receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001508Ionotropic glutamate receptor, metazoaPRINTSPR00177NMDARECEPTORcoord: 476..504
score: 62.76
coord: 635..662
score: 96.43
coord: 604..628
score: 92.0
coord: 566..591
score: 91.15
coord: 817..841
score: 52.0
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 441..799
e-value: 1.6E-74
score: 263.6
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 565..828
e-value: 3.6E-36
score: 124.2
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 452..511
e-value: 1.5E-17
score: 74.3
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 457..549
e-value: 6.4E-31
score: 106.8
NoneNo IPR availableGENE3D3.40.190.10coord: 661..763
e-value: 6.6E-30
score: 103.4
NoneNo IPR availableGENE3D3.40.50.2300coord: 159..401
e-value: 3.4E-30
score: 105.0
NoneNo IPR availableGENE3D3.40.50.2300coord: 24..158
e-value: 1.3E-14
score: 53.6
NoneNo IPR availableGENE3D1.10.287.70coord: 568..660
e-value: 4.6E-10
score: 38.6
NoneNo IPR availableGENE3D3.40.190.10coord: 402..567
e-value: 5.8E-35
score: 119.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 863..919
NoneNo IPR availableCDDcd13719PBP2_iGluR_NMDA_Nr1coord: 403..802
e-value: 2.05428E-142
score: 426.006
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 566..660
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 452..549
coord: 672..800
coord: 404..424
IPR001828Receptor, ligand binding regionPFAMPF01094ANF_receptorcoord: 44..361
e-value: 4.3E-40
score: 137.8
IPR028082Periplasmic binding protein-like ISUPERFAMILY53822Periplasmic binding protein-like Icoord: 24..375

Blast
[Close]
BLAST of TCONS_00058710-protein vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 408/893 (45.69%), Postives = 567/893 (63.49%), Query Frame = 0 
Query:    9 LVILGILQTSSIVFCTT----YNIGVLINNATLEENVLNAKDDINDNPSLHGLGASSRLNVTVLMLPSDPVQATKDICSHLISKSVYVVITTN--AQNSTHSPDIVSYACAFYKIPTIAVQSRNTELSDKNLHPSLLRTVPAYADQARVWADLIRHFKWNKVNLLTSDDYDSRVTYIKFTSWAYKFSIVIERPIMFPAHQKNLTSFLSPLNGTQSKVLLLACSAEDAVTVFRTARALDLTGESYIWITNQQALSSQEGFDLAPQGLLSLRLYDEEKVEGHLRDAFMVTANAIGRLQRTHQLNDPPPNSCDEPSGKWTTGDDLYEALVNTT-VQGSTGTVTFDPYGDRKTPAYELLNVRENKDGTKFNKEVGVLDGNEAVSVDLKDIIWPGNQTDAPTGVFISNHLRIVTVESKPFVYVVERPASGDCSELDGENGRTQKHLPCTGPSSKFPNTRDH----CCKGFCMDLLVKLAEKVNFTYDLHLVEDGNFGSLQRVNGSNIKRWNGLIGEVIEGKADLIVTSLTINNERAQYIEFSKPFKYQGITILVKKNTNKSDLSSFLRPFKPELWLLVLLSVHVVAVILYLLDRFSPFGRYRLAQSNKEETALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPKPVVTGVDDPNLRNPSDLFKYATVAKSSVDAYFRRQVELSSMYTFMEKHNVKTEQEGIEKVKNGELKAFIWDSPVLFHETSQNCDVSTVGDLFGRSGYGIGMPKGSPWSNEISLAVLHFHESGAMEELESTWIDFGNCQSDSNSPTTLGLQHMLGVFIMVAAGIGAGIVIVILEVLYYKHKGWRKQQQKVIKKTTEQWQEHVQERKHQTGGNENSSRSRSRASKSS 890
            L+ L +L + S+          NIG +++    E+     ++ +N     HG     +LN T +    + +Q    +C  LIS  VY ++ ++    N   +P  VSY   FY+IP + + +R +  SDK++H S LRTVP Y+ Q+ VW +++R + WN + LL SDD++ R    +  +   +     E+ + F    KN+T+ L      +++V++L+ S +DA TV+R A  L++TG  Y+W+  ++ +S       AP G+L L+L + +    H+ DA  V A A+  L     + DPP   C   +  W TG      L+++    G TG V F+  GDRK   Y ++N++  K       +VG+ +G   +  D K IIWPG +T+ P G  +S  L+IVT+  +PFVYV    + G C E    NG   K + CTGP+   P +  H    CC GFC+DLL+KLA  +NFTY++HLV DG FG+ +RVN SN K WNG++GE++ G+AD+IV  LTINNERAQYIEFSKPFKYQG+TILVKK   +S L SF++PF+  LWLLV LSVHVVAV+LYLLDRFSPFGR+++    +EE AL LSSAMWFSWGVLLNSGIGEG PRSFSAR+LGMVWAGFAMIIVASYTANLAAFLVLDRP+  +TG++DP LRNPSD F YATV +SSVD YFRRQVELS+MY  MEKHN ++  E I+ V++ +L AFIWDS VL  E SQ CD+ T G+LF RSG+GIGM K SPW   +SL++L  HE+G ME+L+ TW+ +  C S SN+P TL  ++M GVF++VA GI AGI ++ +E+ Y +HK  R++Q ++       W++++Q+RK      +   ++  RA  S+
Sbjct:    6 LLTLALLFSCSVARAACDPKIVNIGAVLSTRKHEQMF---REAVNQANKRHG-SWKIQLNATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYSWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTKNVTALLMEAKELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGEREISGN-ALRYAPDGILGLQLINGKNESAHISDAVGVVAQAVHELLEKENITDPP-RGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSIMNLQNRK-----LVQVGIYNGTHVIPNDRK-IIWPGGETEKPRGYQMSTRLKIVTIHQEPFVYVKPTLSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKSGRAEPDPKKKATFRAITST 886
The following BLAST results are available for this feature:
BLAST of TCONS_00058710-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ10.000e+045.69Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
back to top