TCONS_00058723-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058723-protein
Unique NameTCONS_00058723-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058723-protein ID=TCONS_00058723-protein|Name=TCONS_00058723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=662bp
MDSYSSDSSFSTFQSETSSLSDANSSHLFSQRSSGSASGGGKQTNVKCRY
FMNNGYCFYGDQCQFSHIRPGGASPLTHQNHESYASTSEDDSAFLPSAPT
FVPKQPQSPPQPPPQPQPQPQPQQQQQHQHQHQPQSLQSKFNDHHSKRLF
NKQFPSSNKPPSNTDLLNQQFRRMRIMQQANSKDSQENFQQNDRGNKTLP
HLQIPSNKFDQTSFFMSQQMRMELLKQRSVLLSENKDLAGLGLPENIENY
HSLHPLEDIKSQISGQRLFGYTSTCYRVVNSKDGLHYCMRRIHGFRLLNP
KAVSSVEKWKKVSNSNIVPLKEAFSSKAFNDTSLIFIYQYYPGAETVMAR
HFKNINTTRSPHSESAFWHGGNQNSSGSSFGGKVTQKVMPERLIWSYVIQ
LTAAIRQIHSHGLSCRAIDPSKVLLIGNSRLRLNCPGILDVLTDNEPTSP
AMVVHYQQEDLVALGKLILALACYSMESVQRESIQASIEFVARNYSKDLK
TLIWHLLSSKVTSNQHSINDVMPMIGARFYSQLDVTQSRSDLLENELSKE
MDNGRLLRILAKLGTIIERSELNMDAEWSETGDRYLLKLFRDYLFHQVTE
SGAAWIDFAHIVSTLNKLDAGSSDRICLSSRDELSILVVSYHDLKACLET
AFSELIQSSEMS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036991XLOC_036991Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058723TCONS_00058723Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR030844PAN3
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening
Vocabulary: Cellular Component
TermDefinition
GO:0031251PAN complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening
cellular_component GO:0031251 PAN complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 43..69
e-value: 3.3E-6
score: 36.6
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 47..67
e-value: 3.9E-6
score: 26.5
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 42..70
score: 15.244
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 46..68
NoneNo IPR availableGENE3D1.10.510.10coord: 266..552
e-value: 8.7E-12
score: 44.0
NoneNo IPR availableGENE3D4.10.1000.10coord: 32..80
e-value: 8.4E-7
score: 28.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..140
IPR030844PAB-dependent poly(A)-specific ribonuclease subunit PAN3HAMAPMF_03181PAN3coord: 5..657
score: 28.795
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 389..512
coord: 270..356

Blast
[Close]
BLAST of TCONS_00058723-protein vs. Swiss-Prot (Human)
Match: PAN3 (PAN2-PAN3 deadenylation complex subunit PAN3 OS=Homo sapiens GN=PAN3 PE=1 SV=3)

HSP 1 Score: 472.626 bits (1215), Expect = 3.736e-156
Identity = 232/473 (49.05%), Postives = 329/473 (69.56%), Query Frame = 0 
Query:  198 TLPHLQIPSNKFDQTSFFMSQQMRMELLKQRSVLLSENKDLAGLGLPENIENYHSLHPLEDIK--SQISGQRLFGYTSTCYRVVNSKDGLHYCMRRIHGFRLLNPKAVSSVEKWKKVSNSNIVPLKEAFSSKAFNDTSLIFIYQYYPGAETVMARHFKNINTTRSPHSESAF----WHGGNQNSSGSSFGGKVTQKVMPERLIWSYVIQLTAAIRQIHSHGLSCRAIDPSKVLLIGNSRLRLNCPGILDVLT-----DNEPTSPAMVVHYQQEDLVALGKLILALACYSMESVQRESIQASIEFVARNYSKDLKTLIWHLLSSKVTSNQHSINDVMPMIGARFYSQLDVTQSRSDLLENELSKEMDNGRLLRILAKLGTIIERSELNMDAEWSETGDRYLLKLFRDYLFHQVTESGAAWIDFAHIVSTLNKLDAGSSDRICLSSRDELSILVVSYHDLKACLETAFSELIQSS 659
            T PH+     K +  SFFM+ ++R EL+ +  + +++        +P  +++YHSL PLE +   ++I     FGY ++CY+ VNSKD L YC+RRIHGFRL+N K +  V+ WKK+ +SNIV L+E F++KAF + SL+F Y ++ G ET+M+RHF +      P++++ F    W G ++        G     ++PE LIW+Y++QL++A+R IH+ GL+CR +DP+K+L+ G +RLR+NC G+ DVLT     +N P   A++  YQQ DL++LGK++LALAC S+  +QRE++Q ++E V  NYS DLK LI +LL+ +  +   S+ND+MPMIGARFY+QLD  Q R+D++E +L+KE+ NGRL R+LAKLGTI ER E   D  WSETGDRYLLKLFRD+LFHQVTE+GA WID +HI+S LNKLDAG  ++I L SRDE S+LVV+Y DLK C E  F ELI ++
Sbjct:  427 TAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPAVPTEVDSYHSLFPLEPLPPPNRIQKSSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAFAEPSLVFAYDFHAGGETMMSRHFND------PNADAYFTKRKW-GQHEGPLPRQHAG-----LLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILITGKTRLRVNCVGVFDVLTFDNSQNNNPL--ALMAQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELVTINYSSDLKNLILYLLTDQ--NRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAA 883
The following BLAST results are available for this feature:
BLAST of TCONS_00058723-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAN33.736e-15649.05PAN2-PAN3 deadenylation complex subunit PAN3 OS=Ho... [more]
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