TCONS_00058854-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058854-protein
Unique NameTCONS_00058854-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1575

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058854-protein ID=TCONS_00058854-protein|Name=TCONS_00058854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1575bp
MATQVVQEGNFVQQMELVDKNINEIKEKLDSLHSLENEIMSTLTKLKQEE
RAYFERKNNEKSEQIALKKEDPEAEYKRRLIERFQYKNTDMIKRIYDENQ
ARAKQAHESLLHLNYKGQDLKLPLYNQPSDLKFYNENIEKFKTFKPKLIR
FLQMKRKGEIKVEQHLKRDYENKKKMWLKRIEKVEGNVKRKQRMNRARSF
YEKEFPEIKKQREQQERFDRLGSRSIRSEAELEEISNNLKEFEANKQQKK
SLAINAPHLLSTYDRRIRFINKNGLIRDFERFEAERKSQIIWSDDERRIF
REKFHQAPKDFGKIAAALERKSCMDCVLFYYQNKKKGAFRTTKPKKKKGK
VPAKGSIKSDQNKGKGNSSSINTKPNTFNFELEDFEYIDEDDDEEEDENE
AGQLENEAKETGNETMGGDQKKKNEDGVSLTSNAVQEQSDSTVRDEPTIT
DEESQQDPGKKGAALKTPKPPKVFQTRSQKKQAEAAEANQQQANNEKAEE
NPAEDLFTTSEDEDAHPPLRMKIIVTSPSAVKEKAPPPQTASIVSETITQ
TSYFGEAPPDHPTASAATASKQTTVDVTPPPPAASSSSSSSNEPSSEDLI
RQHLNKMPEHSDPSRWSEPEMMKAVEGLKKHGRSWSNISKMVETKTENQC
KNFYFNYKKKFNLEKILGIAKQQKEEQATWSKNNEEKMDTSEESVKKPQE
SEKSSAKQDKEKGKPSQETSTTTTTNPATTTGGRTGRTRSGKTKSTKTTD
PSKLSTSTVTSSTIATVFMGTPVTTWSNIVSTTLVTVETLSETHTSASNE
DGKDSGDKGEAKGSQPKSDQSMDTSPTKASPFKAPPPLLLSQTEKSKPEN
ENEFSPVPVKISLVDAFTKYEKNIESLDKNMQSPATEGSMPNFPTVVAAS
ISSATSPQQVRLPPSLRHDGGRLSRHADYSEEDIRAFTHSRMHMSAHSSL
SPRLRYTSAGQRMSSQQLPSSSHQPMVSPVFPTPGQNIRHPTDHGLPSSS
EAYRQPVIISSQSFPTSSVPTEEQQRAIRHYQQLEMQRRAAQHQQPYPDH
ETLAQDSMNEFAKRIHEHGSMSPDAINKLVSKFMRTNPKQPQSQSELKQR
AASIPDLRPMATDRSPYMSNKLHPLDADPRLREHQRFGAFEEEILKTKVP
LNPISRPGSAELDHFRNQKRLSDPLRNSRSPDIEMSHKRRSAIVRPWEIE
EEAKRIREASSPFHHTHSTAPTSSHSPRPPLQQPTTPSYIQLSASNKYKD
KIIHYAKQNSPAPETIPKFRYDDPAIHDKTKEYQRQRLASDQSLSPTFPM
SLGVKQPPPSSATSLGRTRSDSEETVSADEEEINKPPPVSLLPPSSTITT
SHQQSLLMQRLKSGTQTEADLDFLKQKKYGGGGAKSHSPRPPSIPPSSSS
TFSSHSQQQQHLLLQQQKQHSLMEIPPRERSPHIAGARPHDERHIRTAEE
LRHHEFLRQKQLEEDAKQMLFQKQRAEEDERLKQAHAHALYEEEMRIRQH
EEELRLLHLQRQHQLPPPYHAVRQQPHPTEDEDLNKRRQQHFLQMKKKEQ
QKLQRIQLEEERLNQRXDVSSISYK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037076XLOC_037076Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058854TCONS_00058854Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017884SANT_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 225..252
NoneNo IPR availableCOILSCoilCoilcoord: 1546..1566
NoneNo IPR availableCOILSCoilCoilcoord: 476..501
NoneNo IPR availableCOILSCoilCoilcoord: 1459..1479
NoneNo IPR availableCOILSCoilCoilcoord: 167..187
NoneNo IPR availableCOILSCoilCoilcoord: 18..52
NoneNo IPR availableCOILSCoilCoilcoord: 394..414
NoneNo IPR availableCOILSCoilCoilcoord: 1568..1568
NoneNo IPR availableGENE3D1.10.10.60coord: 585..664
e-value: 2.5E-14
score: 52.5
coord: 268..340
e-value: 3.5E-8
score: 32.8
NoneNo IPR availableCDDcd00167SANTcoord: 615..658
e-value: 9.13225E-9
score: 52.5778
NoneNo IPR availableCDDcd00167SANTcoord: 292..334
e-value: 3.74793E-4
score: 39.0958
IPR001005SANT/Myb domainSMARTSM00717santcoord: 612..660
e-value: 1.2E-12
score: 58.0
coord: 288..336
e-value: 5.1E-5
score: 32.7
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 615..658
e-value: 5.5E-11
score: 42.4
IPR017884SANT domainPROSITEPS51293SANTcoord: 287..338
score: 13.382
IPR017884SANT domainPROSITEPS51293SANTcoord: 611..662
score: 17.016
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 600..663
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 288..336

Blast
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BLAST of TCONS_00058854-protein vs. Swiss-Prot (Human)
Match: NCOR1 (Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 1.451e-58
Identity = 108/261 (41.38%), Postives = 167/261 (63.98%), Query Frame = 0 
Query:   87 KNTDMIKRIYDENQARAKQAHESLLHLNYKGQDLKLPLYNQPSDLKFYNENIEKFKTFKPKLIRFLQMKRKGEIKVEQHLKRDYENKKKMWLKRIEKVEGNVKRKQRMNRARSFYEKEFPEIKKQREQQERFDRLGSRS-------IRSEAELEEISNNLKEFEANKQQKKSLAINAPHLLSTYDRRIRFINKNGLIRDFERFEAERKSQIIWSDDERRIFREKFHQAPKDFGKIAAALERKSCMDCVLFYYQNKKKGAFR 340
            K+  +++ IYDEN+ +A++AH+    L   G  ++LPLYNQPSD K Y+ENI+  +  + KLI F + +     + EQ + + Y+   + W K+++++E N +RK + ++ R +YEK+FPEI+KQREQQERF R+G R         RSE E+ EI + L E E N++Q + L++  P +     RR++FIN NGL+ D  +   +R+   +W+D E+ IF++KF Q PK+FG IA+ LERKS  DCVL+YY  KK   ++
Sbjct:  231 KHRSIVQIIYDENRKKAEEAHKIFEGL---GPKVELPLYNQPSDTKVYHENIKTNQVMRKKLILFFKRRNHARKQREQKICQRYDQLMEAWEKKVDRIENNPRRKAKESKTREYYEKQFPEIRKQREQQERFQRVGQRGAGLSATIARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMFDAEQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYK 488

HSP 2 Score: 86.6557 bits (213), Expect = 9.679e-17
Identity = 55/158 (34.81%), Postives = 82/158 (51.90%), Query Frame = 0 
Query:  614 SRWSEPEMMKAVEGLKKHGRSWSNISKMVETKTENQCKNFYFNYKKKFNLEKILGIAKQQ-----------------------KEEQATWSKNNEEKMDTSEESVKKPQESEKSSAKQDKEKGKPSQETSTTTTTNPATTTGGRTGRTRSGKTKSTKT 748
            SRW+E EM  A +GL +HGR+W+ I+KMV TK+E QCKNFYFNYK++ NL+ +L   KQ+                       +E++   + N EE  + SE    KP E    +A   +   +P+ E   TT T P+T+       T+  + +S +T
Sbjct:  626 SRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQKTSRKPREERDVSQCESVASTVSAQEDEDIEASNEEENPEDSEVEAVKPSEDSPENAT-SRGNTEPAVELEPTTETAPSTSPSLAVPSTKPAEDESVET 782
The following BLAST results are available for this feature:
BLAST of TCONS_00058854-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCOR11.451e-5841.38Nuclear receptor corepressor 1 OS=Homo sapiens GN=... [more]
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