TCONS_00058857-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058857-protein
Unique NameTCONS_00058857-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058857-protein ID=TCONS_00058857-protein|Name=TCONS_00058857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
VILQHTGENIYVIYLLRASRADSALIYSTCNRLRKQTHVLKNIMASNESR
HKKEPKIHFLKLAFKDAKQMSQGKHSCLEEVKHTMNISLAPKFIGNLKLG
LKEEMNKFLFVYQTKLNGVPLAYDRIQITKSKIIDDQEFLNLEICVNFIV
FQPEISKILRGCVNKLGDHYYGCLFHNCINGMAFKPNPSKLPTEEIKNYF
KNIKLGDEILIKISKIQTEHEVLFVKGGIWTDKRSRKLSRSEPTEDSLGD
PSVKCEMLEENNNDQSIMESLTTTMMTSPKKKKKKKLKDVDSDRETTDNH
DQQIITNGHHILPIKSEPLSESEYIASPKKRKKRKARDDSILTDIDGDVE
SSSSPSKKKKKKKRKIKTEEED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037078XLOC_037078Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058857TCONS_00058857Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 272..372

Blast
[Close]
BLAST of TCONS_00058857-protein vs. Swiss-Prot (Human)
Match: RPA43 (DNA-directed RNA polymerase I subunit RPA43 OS=Homo sapiens GN=TWISTNB PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.271e-24
Identity = 57/186 (30.65%), Postives = 103/186 (55.38%), Query Frame = 0 
Query:   64 FKDAKQMSQGKHSCLEEVKHTMNISLAPKFIGNLKLGLKEEMNKFLFVYQTKLNGVPLAYDRIQITK--SKIIDDQEFLNLEICVNFIVFQPEISKILRGCVNKLGDHYYGCLFHNCINGMAFKPNPSKLPTEEIKNYFKNIKLGDEILIKISKIQTEHEVLF-VKGGIWTDKRSRKLSRSEPTED 246
            +  A  +   ++SCL    H  +I+L+P+++   + G++E+++  L  Y   L GVP+AYD I++      I DDQ  ++L I  +F++F PE  + L G VNK+   + GCL H C N  A  P P +L  E+ +     I +GDE+  ++ ++ ++   +F ++G +  +  S +  RSE +E+
Sbjct:   34 YAAACALVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFN--ASIPKPEQLSAEQWQTM--EINMGDELEFEVFRLDSDAAGVFCIRGKL--NITSLQFKRSEVSEE 213
The following BLAST results are available for this feature:
BLAST of TCONS_00058857-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPA432.271e-2430.65DNA-directed RNA polymerase I subunit RPA43 OS=Hom... [more]
back to top