TCONS_00058911-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058911-protein
Unique Name	TCONS_00058911-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	462

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058911-protein ID=TCONS_00058911-protein|Name=TCONS_00058911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MIQELAAISFDLEPQISEICRTIKGYLDSDLKEMEFEMSILEVDESLLRL
SMKDLNGLWRKIEARAPQRKTWIEGLDKTIQKVERNRAFLISEVFKAYKV
TLENIAHMMPADVQRLMENEIVKTNKFILNNKKCIADLIARLFIGDIDLQ
RRFYIKWQNRCADWKTLKLKEAIQNHKTYMESESVVNPPLINRLLSDLSF
KQKSINKRRLDLLTQLRNMKPPISTKTAVYQWNCALTIITDELDSTNSKF
IFDVKSEQNRILKDCDDYIINLKDKLLNGKIVNSDVIDELFEDTFLPLVG
ERKALFEYQSEKFEKHISEVSASQKLQFKSLFKYTQGIAHIWDIHEIGLT
KEERQLQEMLDKNRREHDYQNQIKEAKLDIVMDRMRQDSSREALNGSLHQ
SLNMMEGIKKGYLEFHKQQRGLIEKYPKMIKEEVKRYATSMSSFFNAAEQ
GXYQSLYMFKMH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037099	XLOC_037099	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058911	TCONS_00058911	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR028089	DUF4455

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..93
IPR028089	Domain of unknown function DUF4455	PFAM	PF14643	DUF4455	coord: 3..449 e-value: 4.2E-115 score: 385.1

Blast

[Close]

BLAST of TCONS_00058911-protein vs. Swiss-Prot (Human)
Match: CC180 (Coiled-coil domain-containing protein 180 OS=Homo sapiens GN=CCDC180 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 7.475e-47
Identity = 118/447 (26.40%), Postives = 228/447 (51.01%), Query Frame = 0

Query:    3 QELAAISFDLEPQISEICRTIKGYLDSDLKEMEFEMSIL----EVDESLLRLSMKDLNGLWRKIEARAPQRKTWIEGLDKTIQKVERNRAFLISEVFKAYKVTLENIAHMMPADVQRLMENEIVKTNKFILNNKKCIADLIARLFIGDIDLQRRFYIKWQNRCADWKTLKLKEAIQNHKTYMESESVVNPPLINRLLSDLSFKQKSINKRRLDLLTQLRNMKPPISTKTAVYQWNCALTIITDELDSTNSKFIFDVKSEQNRILKDCDDYIINLKDKLLNGKIVNSDVIDELFEDTFLPLVGERKALFEYQSEKFEKHISEVSASQKLQFKSLFKYTQGIAHIWDIHEIGLTKEERQLQEMLDKNRREHDYQNQIKEAKLDIVMDRMRQDSSREALNGSLHQSLNMMEGIKKGYLEFHKQQRGLIEKYPKMIKEEVKRYATSMSSFF 445
            +E+A +  ++EP I +      G     L E + EM+ L    E D +L   +++ L  LW K+  R   RK  I+ LD+ +  +E +R   +  V K Y   +E  +++M  +V RL+  E +  N  +L N+K +A L   L    +  +     +WQ     WK LK +  +Q+   +M SES+  PP + + L  +   Q  + +RRL  L  + ++ PP  +KT + +W+ +L  +  ELD+ +   +  ++    +  ++C  ++ N K +LL+ K    +  + L    F  +VG  +   E   E  +K    ++   + Q   LFKY Q +  +W+ H+  L  +E +L++ ++++R++H  ++Q++EA LD ++D++RQ S +E L   L +  + ++ +K  Y  FH      + +YP ++ +E+  Y++++S +F
Sbjct:  329 EEIAQVGKEMEPLIVDT----GGLFLKKLTESDEEMNRLFLKVENDTNLEDYTIQALLELWDKVAGRLLLRKQEIKELDEALHSLEFSRTDKLKSVLKKYAEVIEKTSYLMRPEVYRLINEEAMVMNYALLGNRKALAQLFVNLMESTLQQELDSRHRWQGLVDTWKALKKEALLQSFSEFMASESIHTPPAVTKELEVMLKTQNVLQQRRLKHLCTICDLLPPSYSKTQLTEWHSSLNSLNKELDTYHVDCMMRIRLLYEKTWQECLMHVQNCKKQLLDWKAFTEEEAETLVNQFFFQMVGALQGKVEEDLELLDKSFETLADQTEWQSSHLFKYFQEVVQLWEAHQSELLVQELELEKRMEQHRQKHSLESQVQEAHLDRLLDQLRQQSDKETLAFHLEKVKDYLKNMKSRYECFHTLLTKEVMEYPAIMLKELNSYSSALSQYF 771

The following BLAST results are available for this feature:

BLAST of TCONS_00058911-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058911-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CC180	7.475e-47	26.40	Coiled-coil domain-containing protein 180 OS=Homo ...	[more]

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TCONS_00058911-protein (polypeptide) - C. hemisphaerica