TCONS_00058918-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058918-protein
Unique NameTCONS_00058918-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058918-protein ID=TCONS_00058918-protein|Name=TCONS_00058918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
ARQRCTKRNRKTLKVVGILLDDNMFTLPVQKKQLTGELVCGERQYLCLIP
KDGAKSWEKHCCAGFMIDAALEMFQEVGFDWELYAVPDSKFGAYSNCTDV
EDHSTCQWNGVVRELKEGRADVAITGLTITHPRLQVIDFTEEIFLTRLGM
ALGNRPKKLKFLNWKFIESIDSNLMIALVIILPVFCYTTYMMEKITSKFD
DSSTSNPYTLENSFTYGAGLTFQRDLVGKTPIYWSARLLSICYAVALMII
MSTYTANLTASTVLSDRYANFKGMYD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037104XLOC_037104Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058918TCONS_00058918Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019594Glu/Gly-bd
IPR001320Iontro_rcpt
Vocabulary: Molecular Function
TermDefinition
GO:0005234extracellular-glutamate-gated ion channel activity
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 169..276
e-value: 3.3E-8
score: 32.6
NoneNo IPR availableGENE3D3.40.190.10coord: 8..168
e-value: 1.3E-19
score: 69.6
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 58..165
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 55..143
e-value: 2.4E-18
score: 66.3
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 182..274
e-value: 3.2E-11
score: 43.2

Blast
[Close]
BLAST of TCONS_00058918-protein vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.172e-22
Identity = 66/220 (30.00%), Postives = 100/220 (45.45%), Query Frame = 0 
Query:   59 KHCCAGFMIDAALEMFQEVGFDWELYAVPDSKFGAYSNCTDVEDHSTCQWNGVVRELKEGRADVAITGLTITHPRLQVIDFTEEIFLTRLGMALGNR--PKKLKFLNWKFIESIDSNLMIALVIILPVFCYTTYMMEKITSKFDDSSTSNPYTLENSFTYGAGLTFQRDLVGKTPIYWSARLLSICYAVALMIIMSTYTANLTASTVLSDRYANFKGMYD 276
            K CC G+ ID   ++ +++ FD++LY V D K+GA+ N           W G+V +L  G A +A+T  +I   R QVIDFT   F T LG+ +  R     +    W    ++   + +AL I   VF                 + S  ++  ++      L F R +  K P  W+ R L   +A+  M  +STYTANL A  V    Y    G++D
Sbjct:  573 KKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNG---------HWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFVALHITA-VFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHD 782
The following BLAST results are available for this feature:
BLAST of TCONS_00058918-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A3.172e-2230.00Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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