TCONS_00059117-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059117-protein
Unique NameTCONS_00059117-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059117-protein ID=TCONS_00059117-protein|Name=TCONS_00059117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MTADHPAEKHEEMDVIDRADLDDHPSDHSSAGSPAPSISTEDGNKKARPK
AKRKRLLKDVNAPKAPLTGYVRFLNEKREKFREDHPDMPFHEITKALGQK
WSSMTQEEKQDYLDQAEKEKERYVKELEGYQQTPAYKEFQELKKRKEAEY
QHSEEQDPRHLPPKIKHDYPYTNSPKTNGVPLPAPAPGPKLTAENGTQIP
IFSEQFLEYSRKRESDLRQLRKGNAVFEEQNAILNKQIDHMKNVMDRVKK
EIIQQENENISVQSYLDQIRKILVSRFGKINFPEHLSATLNSENVDNKLA
QLAEFLNGSRSTEYGDLKKRVRDVISKLDFPNIKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037235XLOC_037235Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059117TCONS_00059117Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..133
NoneNo IPR availableCOILSCoilCoilcoord: 217..258
NoneNo IPR availableCOILSCoilCoilcoord: 136..156
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 96..115
score: 33.7
coord: 78..96
score: 25.15
coord: 115..135
score: 33.16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 63..128
e-value: 6.00617E-22
score: 86.5277
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 62..132
e-value: 2.1E-20
score: 83.8
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 56..161
e-value: 3.3E-26
score: 91.1
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 63..130
e-value: 2.0E-19
score: 69.7
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 63..131
score: 19.619
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 54..135

Blast
[Close]
BLAST of TCONS_00059117-protein vs. Swiss-Prot (Human)
Match: HM20A (High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.379e-57
Identity = 110/291 (37.80%), Postives = 172/291 (59.11%), Query Frame = 0 
Query:   39 STEDGNKKARPKAKRKRLLKDVNAPKAPLTGYVRFLNEKREKFREDHPDMPFHEITKALGQKWSSMTQEEKQDYLDQAEKEKERYVKELEGYQQTPAYKEFQELKKRKEAEYQHSEEQDPRHLPPKIKHDYPYTNSPKTNGVPLPAPAPGPKLTAENGTQIPIFSEQFLEYSRKRESDLRQLRKGNAVFEEQNAILNKQIDHMKNVMDRVKKEIIQQENENISVQSYLDQIRKILVSRFGKINFPEHLSATLNSENVDNKLAQLAEFLNGSRSTEYGDLKKRVRDVISKLD 329
            S   G  K R   KRK+ L+D NAPK+PLTGYVRF+NE+RE+ R   P++PF EIT+ LG +WS +  EEKQ YLD+A+++KERY+KELE YQ+T AYK F   +K ++ +   S  QD      +  HD+      K   V                  IPIF+E+FL +S+ RE++LRQLRK N  FEE+NA L K ++ M+  +++++ ++IQ+ + N  +Q +L+ +R++L S F  +  P     T   + +D+ + +L   +  +   +  +    VR+V+++LD
Sbjct:   82 SKRGGWSKGR---KRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS--RKTQDRQKGKSHRQDAAR---QATHDHEKETEVKERSV----------------FDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMPLPGS-GETPTVDTIDSYMNRLHSIILAN-PQDNENFIATVREVVNRLD 346
The following BLAST results are available for this feature:
BLAST of TCONS_00059117-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HM20A7.379e-5737.80High mobility group protein 20A OS=Homo sapiens GN... [more]
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