TCONS_00059219-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059219-protein
Unique Name	TCONS_00059219-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	407

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059219-protein ID=TCONS_00059219-protein|Name=TCONS_00059219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MALASLYDGVDLGKDKEKSANLNPTKIAGWSDNLQFMKTQLQLKKASTSK
GIKGGKSVLSTGPGNITLSSIMAPADKQVVLIDEYNPLRPNDYNDFKVRM
REKEERERRDKERRREREERERERERRDNKDGNDNRRDERRRSPHRDDQD
KDRDRDRKRRRDDDRSRDYGGRAAIAPPPSLLETTPVNAEIIQKKENSAG
TGGFSTGNLIASQIMAKYGWKEGQGLGREEQGLSTCLQVEKTGKRAGKII
NKDVEKAKEKDSFPPPSFPPPSFPPPMGGAMGGVPNSPSQPQPPDVSGND
SQMADLMKNPSKVVLLKNMVGPGEVDDELQPEIEEECTTKYGDIIKVIIF
EIPNAQEEEAVRIFVEFKRMESAIKALMDLNNRFFGGRSVSASFYNVDKF
RRLDLAS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037296	XLOC_037296	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059219	TCONS_00059219	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000467	G_patch_dom
IPR003954	RRM_dom_euk
IPR016967	Splicing_factor_SPF45
IPR000504	RRM_dom
IPR034653	SPF45_RRM

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair
GO:0043484	regulation of RNA splicing

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0043484	regulation of RNA splicing
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..135
None	No IPR available	GENE3D	3.30.70.330		coord: 311..396 e-value: 5.0E-15 score: 55.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..181
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 205..251 e-value: 1.2E-9 score: 48.0
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 210..249 e-value: 1.2E-12 score: 47.4
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 207..253 score: 13.194
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 313..393 e-value: 5.3E-17 score: 72.5
IPR016967	Splicing factor, SPF45	PIRSF	PIRSF031066	SPF45	coord: 56..407 e-value: 9.2E-87 score: 289.9 coord: 4..57 e-value: 0.55 score: 7.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 312..397 score: 9.303
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 318..400
IPR034653	SPF45, RNA recognition motif	CDD	cd12647	RRM_UHM_SPF45	coord: 310..405 e-value: 1.81327E-55 score: 179.005

Blast

[Close]

BLAST of TCONS_00059219-protein vs. Swiss-Prot (Human)
Match: SPF45 (Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.320e-68
Identity = 171/450 (38.00%), Postives = 237/450 (52.67%), Query Frame = 0

Query:    5 SLYDGVDLGKDKEKSANLNPTKIAGWSDNLQFMKTQLQLKKASTSKGI-----------------KGGKS----VLSTGPGNIT-----LSSIMAPADKQVVLIDEYNPLRPNDYNDFKVRMREKEERERRDKERRREREERERERERRDNKDGNDNRRD------------ERRRS-------PHRDDQDKDRDRDRKR-RRDDDRSRDYGGRAAIAPPPSLLETTPVNAEIIQKKENSAGTGGF--STGNLIASQIMAKYGWKEGQGLGREEQGLSTCLQVEKTGKRAGKIINKDVEKAKEKDSFPPPSFPPPSFPPPMGGAMGGVPNSPSQPQPPDVSGNDSQMADLMKNPSKVVLLKNMVGPGEVDDELQPEIEEECTTKYGDIIKVIIFEIPNAQEEEAVRIFVEFKRMESAIKALMDLNNRFFGGRSVSASFYNVDKFRRLDLA 406
            SLYD  DLG +   S      K  GWS N + +++QLQ+KKA+ ++                   +GG S    ++ T P         + S  +  +  + L DEY+P+ PNDY    V+ + +E + +R+ ER++E EERE+ R+ R    G   R D             R+RS       P     +KD++  R     +D R R    +AAI PP        V  E  + +  +  +  F  + G  +A +IM KYG++EGQGLG+ EQGLST L VEKT KR GKII  D   A EKD+                        S S P           + +++K P+KVVLL+NMVG GEVD++L+ E +EEC  KYG + K +IFEIP A ++EAVRIF+EF+R+ESAIKA++DLN R+FGGR V A FYN+DKFR LDLA
Sbjct:    2 SLYD--DLGVETSDS------KTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV-VKRQREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPP--------VYEEQDRPRSPTGPSNSFLANMGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGD---ATEKDA---------------------SKKSDSNP-----------LTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 398

The following BLAST results are available for this feature:

BLAST of TCONS_00059219-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059219-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPF45	1.320e-68	38.00	Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 S...	[more]

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TCONS_00059219-protein (polypeptide) - C. hemisphaerica