TCONS_00059258-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059258-protein
Unique Name	TCONS_00059258-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	494

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059258-protein ID=TCONS_00059258-protein|Name=TCONS_00059258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
MDENKDVLSINSDSSSPTSNAEFIMVDDNISNASTATKISFSDTQSDDFM
PKMGDMDHGQDVSQLVAEAQMDLISDYYTSNKDQLNDIEEDFGSKKEMMR
AVSPQSSDEERHMSGNDDDKDACIMFHGITYLGSSNIDAPKSDLELERAI
SILRDHVEECIDVILSVSVNPLGQIQLIDPQSRTEIATYDISNICYWGKG
KSNSVEKDCLAFNISHGKEDVTYHCHVFKCNEDDVKRILQSLAQTIKKDQ
KRKQNEFPSNRRGSKFDLNDLSFKFNIILDVWEEDGKGSFQTVARDKTHF
KLRKDLQRKLVFVIEQTSNCKLKIERCFGLLLAQGRDIPEGDFHLLQQID
TDTQIPGKTIIHAHWDSTLDYWKVLNTDPGKDNRVYMTVAADVVFKDLKE
PVRFVKEAKVRVFPSNEKFWNPSKPRIQEDFVLELKENFNDEGEKWLEKE
SLHSAVEVQKLKNSSGSLSSIWKNNTNKPKXKWFSFFYMEKQYQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037311	XLOC_037311	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059258	TCONS_00059258	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006020	PTB/PI_dom
IPR022164	Kinesin-like
IPR011993	PH_dom-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006020	PTB/PI domain	SMART	SM00462	PTB_9	coord: 121..259 e-value: 1.9E-7 score: 40.8
IPR006020	PTB/PI domain	PFAM	PF00640	PID	coord: 156..249 e-value: 9.6E-9 score: 35.3
IPR006020	PTB/PI domain	PROSITE	PS01179	PID	coord: 175..246 score: 9.886
IPR022164	Kinesin-like	PFAM	PF12473	DUF3694	coord: 290..417 e-value: 1.6E-21 score: 77.4
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 74..245 e-value: 1.3E-19 score: 69.9
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 127..254

Blast

[Close]

BLAST of TCONS_00059258-protein vs. Swiss-Prot (Human)
Match: RBGP1 (Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 6.523e-66
Identity = 155/464 (33.41%), Postives = 244/464 (52.59%), Query Frame = 0

Query:    1 MDENKDV--LSINSDSSSPTSNAEFIMVD------DNISNAS----TATKISFSDTQSDDFMPKMGD------MDHGQDVSQLVAEAQMDLISDYYTSNK----DQLNDIEEDFGSKKEMMRAVSPQSSDEERHMSGNDDDKDACIMFHGITYLGSSNIDAPKSDLELERAISILRDHVEECIDVILSVSVNPLGQIQLIDPQSRTEIATYDISNICYWGKGKSNSVEKDCLAFNISHGKEDVTYHCHVFKCN-EDDVKRILQSLAQTIKKDQKRKQNEFPSNRRGSKFDLNDLSFKFNIILDVWEEDGKGSFQTVARDKTH--FKLRKDLQRKLVFVIEQTSNCKLKIERCFGLLLAQGRDIPEGDFHLLQQIDTDTQIPGKT-IIHAHWDSTLDYWKVLNTDPGKDNRVYMTVAADVVFKDLKEPVRFVKEAKVRVFPSNEK-FWNPSKPRIQEDFVLELKE 437
            MD+   V  +S++SDS S  ++ +F++V        + +N S    T  KI   +        ++ D      MD      +LV  +Q+D   D   SN+      +N +      K EM   V P   D E          +  ++F  +TYLG ++++AP+S++E  R +SILR   +  +DV LSV     G ++L+DPQ+ TEIA Y I  I +  +G   + E DC AF  SH   ++ +  HVF+C  ++ V RIL S A   ++  K+      +  +    D+    F F++ L++ E+DGKG F  V +DK    FKLR+ + +K+V  ++QT+N +L IERCFGLLL+ G+D+   D HLL          GK+ +I   W+    +++V+N +  KD  ++MT A D+V  +++EPVRF+ E KVRV   NE+ FW  SK    E+F L+LK+
Sbjct:    1 MDDKASVGKISVSSDSVSTLNSEDFVLVSRQGDETPSTNNGSDDEKTGLKI-VGNGSEQQLQKELADVLMDPPMDDQPGEKELVKRSQLDGEGDGPLSNQLSASSTINPVPLVGLQKPEMSLPVKPGQGDSEASSPFTPVADEDSVVFSKLTYLGCASVNAPRSEVEALRMMSILRSQCQISLDVTLSVPNVSEGIVRLLDPQTNTEIANYPIYKILFCVRGHDGTPESDCFAFTESHYNAEL-FRIHVFRCEIQEAVSRILYSFATAFRRSAKQTPLSATAAPQTPDSDI----FTFSVSLEIKEDDGKGYFSAVPKDKDRQCFKLRQGIDKKIVIYVQQTTNKELAIERCFGLLLSPGKDVRNSDMHLLDLESMGKSSDGKSYVITGSWNPKSPHFQVVNEETPKDKVLFMTTAVDLVITEVQEPVRFLLETKVRVCSPNERLFWPFSKRSTTENFFLKLKQ 458

The following BLAST results are available for this feature:

BLAST of TCONS_00059258-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059258-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RBGP1	6.523e-66	33.41	Rab GTPase-activating protein 1 OS=Homo sapiens GN...	[more]

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TCONS_00059258-protein (polypeptide) - C. hemisphaerica