TCONS_00059301-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059301-protein
Unique Name	TCONS_00059301-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	468

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059301-protein ID=TCONS_00059301-protein|Name=TCONS_00059301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MDTKDGITNGNLYQEISESITKEQIHFVRLETEDINSVSRGILLDADYFL
ENAKEGFGFPLGLIGCIDFDGKHVSNKILDSGTTYGNGALYPDLSTFKKL
PWRTNVASAICDLSTTFGDLNTSNFHTRSICKQQFRKLNQLGFELKSASE
YEYYVVNKETLKPLDETDNFVSTLFNEEKFGIASQIMYSLKKIGVFPEKF
HMECAPSMFEITFKPSFGIKGPDNAIRYRSTVKEVCRKEGVEALFMTTPF
KDEYKSTSNFNHSLWSLTEKTNVFYDAANSHKLSEKGQNWLAGLKAHSKA
LLCLAMPTYNCYHHFQEEFKPMMGMNTAWGYDNRTAGYRVKVINEKSTLI
EHRQPTSAVNPYLYTAGLLIAGMDGLKRGLQLTDPAHDGIVDNEPECSPY
FDIPKTLDEALRCFQEDELFVKEFGEEFIEVYVTLKKNEIQRIEEMKKLS
NGDEKLLWKLYTKYYQTL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037345	XLOC_037345	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059301	TCONS_00059301	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008146	Gln_synth_cat_dom
IPR008147	Gln_synt_b-grasp
IPR014746	Gln_synth/guanido_kin_cat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004356	glutamate-ammonia ligase activity
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006807	nitrogen compound metabolic process
GO:0006542	glutamine biosynthetic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006542	glutamine biosynthetic process
biological_process	GO:0006807	nitrogen compound metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004356	glutamate-ammonia ligase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008146	Glutamine synthetase, catalytic domain	SMART	SM01230	Gln_synt_C_2	coord: 124..372 e-value: 5.8E-44 score: 162.1
IPR008146	Glutamine synthetase, catalytic domain	PFAM	PF00120	Gln-synt_C	coord: 126..445 e-value: 2.7E-70 score: 237.0
IPR008147	Glutamine synthetase, beta-Grasp domain	GENE3D	3.10.20.70		coord: 11..121 e-value: 2.1E-16 score: 59.5
IPR008147	Glutamine synthetase, beta-Grasp domain	SUPERFAMILY	54368	Glutamine synthetase, N-terminal domain	coord: 13..118
IPR014746	Glutamine synthetase/guanido kinase, catalytic domain	GENE3D	3.30.590.10		coord: 123..458 e-value: 1.4E-69 score: 234.3
None	No IPR available	SUPERFAMILY	55931	Glutamine synthetase/guanido kinase	coord: 125..446

Blast

[Close]

BLAST of TCONS_00059301-protein vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.797e-61
Identity = 141/438 (32.19%), Postives = 209/438 (47.72%), Query Frame = 0

Query:   14 QEISESITKEQIHFVRLETEDINSVSRGILLDADYFLENAKEGFGFPLGLIGCIDFDGKHVSNKILDSGTTYGNG-ALYPDLSTFKKLPWRTNVASAICDLSTTFGD-LNTSNFHTRSICKQQFRKLNQLGFELKSASEYEYYVVNKETLKPLDETDNFVSTLFNEEKFGIASQIMYSLKKIGVFPEKFHMECAPSMFEITFKPSFGIKGPDNAIRYRSTVKEVCRKEG-VEALFMTTPFKDEYKSTSNFNHSLWSLTEKTNVFYDAANSHKLSEKGQNWLAGLKAHSKALLCLAMPTYNCYHHFQEEFKPM-MGMNTAWGYDNRTAGYRVKVINEKSTLIEHRQPTSAVNPYLYTAGLLIAGMDGLKRG---LQLTDPAHDGIVDNEPECSPYFDIPKTLDEALRCFQEDELFVKEFGEEFIEVYVTLKKNEIQRIE 444
            + I +++ K ++ FVR E  D++ VSR   + A +F E    G   P G +  I     +  N I    T + +   L P+LSTF+ LPW    A  ICD  T  G+ L TS    R I K+Q   L   GF L SA  Y++ +     +           T  N        +++  L   G   E F     P   EI+F P FGI   DNA   R+ VKEV RK   + + F+ T F D    +   +HSLW +  K N+F   + + +L+  G+ WLAGL  HS AL CL  P+ +C   + ++ K +   + T WGY++ +  + +K   EK T IE++  ++  NPYL  A  + AG+DGL      L   D + D     EP      +IP  L++AL   +ED+   +  GE FI  +V +KK E++  E
Sbjct:   74 KHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNI--RATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTGEPLLTS---PRYIAKRQLSHLQASGFSLLSAFIYDFCIFGVPEILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASFFIETGFCD----SGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTD-FYQVEPS-----EIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELENEE 496

The following BLAST results are available for this feature:

BLAST of TCONS_00059301-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059301-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LGSN	2.797e-61	32.19	Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1	[more]

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TCONS_00059301-protein (polypeptide) - C. hemisphaerica