TCONS_00059401-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059401-protein
Unique NameTCONS_00059401-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length856

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059401-protein ID=TCONS_00059401-protein|Name=TCONS_00059401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=856bp
MWLKNKKQLMVEWVEIIEPSRQEHMFANLTTGQCLWEPPNGVKVKPTHEN
QWWELFDSNTKRYYYYNATSQKTVWHKPKEGDIIPLSKLQMLKAKEEVRQ
KESSTTSLIQPSSPTSKKYSSHNTITDLPRSSSSFSGKGSITAHRNNKNL
QKYSSESALSLDSTTKNKRTMMYQRQDSSDDEEENHYQNFSIISSQHIKD
TSDSMPQLNTFTNNNHQRTIPSTTTFSKSATLPNKKTTAPLDESTIEKKQ
KFHSLRPPKKPPRTHILDAPQKEGDKENIGPDVEEPTYDTPSNIMCTDVN
LPSAIDDLSQDDVDSKPPSSSREESTVTESRSTIPPAPPIPASLQRFPPG
RHAQISIYDNVPRPMYDNVSDNEESVEDLGCMDTTNSSMNETFATSDDSY
TPSGTLLRGEENNRSSYYERLNDNENDGEIYNISSPIPTSQVDGNTASST
ATYDNKPIAAKRSPLTRMKSDTLDVQKRAKFAKNTELANQNFRPISMMNL
AGATGGSKPIKKTPSNAGEIPKEVKTSLNTHRKGVFRRRMSIHSMLSWSK
TPIKKPMVMTRDKQQRKDAVEVFKIILQCMGDKSSRKSFESLAVEVTTRG
WQTTHLRDEIYVQLCKQTTGNDKLKSLRYGWELMTACLTIFPPSNKFHGY
LEGYIYKYLDTEDLSPIAIEAQVDKYAKHCYKQLERICEMGAKRGLKGPT
TDEIQSAIKRVFNPSMFGNTLEDIMEMQSQRFPDNRLPWILTTLTDAILL
LNGLQTEGIFRVPGDIDSVNALKLLIDKWEGTKNNVKDPHTPASLLKLWF
RDLYEPLXGPSHTGLSSQTMVSRPVRATNTATILRPMHTQCRLTGDLSKY
RELFTG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037394XLOC_037394Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059401TCONS_00059401Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR000857MyTH4_dom
IPR000198RhoGAP_dom
IPR008936Rho_GTPase_activation_prot
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0005856 cytoskeleton
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 8..41
e-value: 11.0
score: 7.5
coord: 47..80
e-value: 0.021
score: 24.0
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 46..80
score: 11.822
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 44..80
IPR000857MyTH4 domainSMARTSM00139MyTH4_1coord: 548..708
e-value: 4.2E-18
score: 76.2
IPR000857MyTH4 domainPFAMPF00784MyTH4coord: 592..706
e-value: 8.7E-28
score: 96.9
IPR000857MyTH4 domainPROSITEPS51016MYTH4coord: 548..708
score: 38.313
NoneNo IPR availableGENE3D1.10.555.10coord: 668..816
e-value: 5.0E-24
score: 84.3
NoneNo IPR availableGENE3D2.20.70.10coord: 45..118
e-value: 1.6E-6
score: 27.2
NoneNo IPR availableCDDcd00201WWcoord: 53..80
e-value: 6.91062E-4
score: 37.5074
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 738..811
e-value: 5.2E-13
score: 49.0
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 719..856
score: 15.602
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 713..814

Blast
[Close]
BLAST of TCONS_00059401-protein vs. Swiss-Prot (Human)
Match: RHG39 (Rho GTPase-activating protein 39 OS=Homo sapiens GN=ARHGAP39 PE=1 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 8.372e-99
Identity = 151/297 (50.84%), Postives = 210/297 (70.71%), Query Frame = 0 
Query:  512 KTPSNAGEIPKEVKTSLNTHRKGVFRRRMSIHSMLSWSKTPIKKPMVMTRDKQQRKDAVEVFKIILQCMGDKSSRKSFESLAVEVTTRGWQTTHLRDEIYVQLCKQTTGNDKLKSLRYGWELMTACLTIFPPSNKFHGYLEGYIYKYLD-TEDLSPIAIEAQVDKYAKHCYKQLERICEMGAKRGLKGPTTDEIQSAIKRVFNPSMFGNTLEDIMEMQSQRFPDNRLPWILTTLTDAILLLNGLQTEGIFRVPGDIDSVNALKLLIDKWEGTKNNVKDPHTPASLLKLWFRDLYEPL 807
            + PS+  +I        N H +G+FRR++SI +ML+WS   IKKPM++T D+  +K+A E+FK+I   MGD+ ++     +A+EV T+GW    LRDE+Y+QLC+QTT N +L+SL  GWELM  CL  FPP+ KFH YLEGYIY+++D   D   +AI      YAK+CY +L++    GAK+GLK P  +EI+ A   VF+PSMFG+ L+++M MQ +R+P+ +LPW+ T L++ +L LNG QTEGIFRVPGDID VNALKL +D+W+     ++DPH PASLLKLW+R+L EPL
Sbjct:  686 RKPSSETDIENWASKHFNKHTQGLFRRKVSIANMLAWSSESIKKPMIVTSDRHVKKEACELFKLIQMYMGDRRAKADPLHVALEVATKGWSVQGLRDELYIQLCRQTTENFRLESLARGWELMAICLAFFPPTPKFHSYLEGYIYRHMDPVNDTKGVAI----STYAKYCYHKLQKAALTGAKKGLKKPNVEEIRHAKNAVFSPSMFGSALQEVMGMQRERYPERQLPWVQTRLSEEVLALNGDQTEGIFRVPGDIDEVNALKLQVDQWK-VPTGLEDPHVPASLLKLWYRELEEPL 977

HSP 2 Score: 140.198 bits (352), Expect = 6.311e-34
Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 0 
Query:   11 VEWVEIIEPSRQEHMFANLTTGQCLWEPPNGVKVKPTHENQWWELFDSNTKRYYYYNATSQKTVWHKPKEGDIIPLSKLQMLKAKEEVRQ--------------KESSTTSLIQPSSPTSK 117
            +EWVEIIEP  +E M+ANL TG+C+W+PP GV++K T ENQWWELFD NT R+YYYNA++Q+TVWH+P+  DIIPL+KLQ LK   E  +              +E ST+S ++P   T K
Sbjct:   28 LEWVEIIEPRTRERMYANLVTGECVWDPPAGVRIKRTSENQWWELFDPNTSRFYYYNASTQRTVWHRPQGCDIIPLAKLQTLKQNTESPRASAESSPGRGSSVSREGSTSSSLEPEPDTEK 148
The following BLAST results are available for this feature:
BLAST of TCONS_00059401-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHG398.372e-9950.84Rho GTPase-activating protein 39 OS=Homo sapiens G... [more]
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