TCONS_00059406-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059406-protein
Unique NameTCONS_00059406-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059406-protein ID=TCONS_00059406-protein|Name=TCONS_00059406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
DKTKRSKQSNNVNIVTQQQTPEWTDAELQQKLIDIAESSSSSSHPTKALE
FPSHLTAKQRALVHEKAEELGLSHQSIGEGQQRRIVVDKKKKKETVDVVS
SVAQHGELSEATCLTCSARMPKSNLQLHSIRCFTKAATEKTVQENGTTTS
GARPKMSSKSNAKKKKSKTNENTKSKGGPADPDEDIDSLLEEFTKMNNSC
GFGQCKISIKTLGQKCTFCSKMFCLTHHMAEIHGCGHDIRMRARQDIAKY
GSAKPTPMNRTKKVQVQKKLDKKLDELQGDRKRKTKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037396XLOC_037396Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059406TCONS_00059406Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001374R3H_dom
IPR000058Znf_AN1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 267..287
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
IPR001374R3H domainSMARTSM00393R3H_4coord: 17..90
e-value: 2.0E-4
score: 30.7
IPR001374R3H domainPFAMPF01424R3Hcoord: 31..88
e-value: 3.1E-11
score: 43.0
IPR001374R3H domainGENE3D3.30.1370.50coord: 22..95
e-value: 2.1E-14
score: 52.6
IPR001374R3H domainPROSITEPS51061R3Hcoord: 22..91
score: 16.007
IPR001374R3H domainSUPERFAMILY82708R3H domaincoord: 45..90
IPR000058Zinc finger, AN1-typeSMARTSM00154AN1_Zf_4coord: 200..240
e-value: 7.0E-5
score: 32.2
IPR000058Zinc finger, AN1-typeGENE3D4.10.1110.10coord: 144..257
e-value: 2.0E-16
score: 59.3
IPR000058Zinc finger, AN1-typePFAMPF01428zf-AN1coord: 200..238
e-value: 3.9E-7
score: 30.0
IPR000058Zinc finger, AN1-typePROSITEPS51039ZF_AN1coord: 197..243
score: 8.894
IPR000058Zinc finger, AN1-typeSUPERFAMILY118310AN1-like Zinc fingercoord: 184..248

Blast
[Close]
BLAST of TCONS_00059406-protein vs. Swiss-Prot (Human)
Match: SMBP2 (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.277e-29
Identity = 78/254 (30.71%), Postives = 121/254 (47.64%), Query Frame = 0 
Query:   49 LEFPSHLTAKQRALVHEKAEELGLSHQSIGEGQQRRIVVDKKKKKETVDVVSSVAQHGELSEATCLTCSARMPKSNLQLHS-----IRCFTKAATEKTVQENGTTTSGARPKMSSKSNAKKKKSKTNENTKSKGGPA---DPDEDIDSLLEEFTKMNNSCGFGQCKISIKTLGQKCTFCSKMFCLTHHMAEIHGCGHDIRMRARQDIAKYG------SAKPTPMNRTKKVQVQKKLDKKLDELQGDRKRKTKKK 288
            LEFP  L +  R  VH+ AEE GL H S GEG++R I V K+  +    +       G           A+  +   +        +R       ++     G      +P    +  + ++K    +  K+KG PA     +ED ++L+    K +N+CGF +C   + TLGQ C  CS+ +CL+HH+ EIHGCG   R  ARQ I++ G        K   ++  K+ Q+Q++LDKKL EL   R  + K++
Sbjct:  744 LEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRAPRPRAALGPPAGTGGPAPLQPVPPTPAQTEQPPREQRGPDQPDLRTLHLERLQRVRSAQG------QPASKEQQASGQQKLPEKKKKKAKGHPATDLPTEEDFEALVSAAVKADNTCGFAKCTAGVTTLGQFCQLCSRRYCLSHHLPEIHGCGERARAHARQRISREGVLYAGSGTKNGSLDPAKRAQLQRRLDKKLSELSNQRTSRRKER 991
The following BLAST results are available for this feature:
BLAST of TCONS_00059406-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMBP21.277e-2930.71DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGH... [more]
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