TCONS_00059421-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059421-protein
Unique NameTCONS_00059421-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059421-protein ID=TCONS_00059421-protein|Name=TCONS_00059421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MVKMAGVEISHPHISVQYDWQSILRNTNEKAWVVCSQEGSPNIYSDVICK
KHTQDVKVKTLDVSTNGVHAEILNGNNLKLNYKTTTSHMISPKASFKDIH
LKAIRSMNISPGGSLGVSSSEDGALYVWQTEDGKLRRTLDGHVSEVTHCR
FFPSGMVVLSGGVDMRLKIWSVEDGSCPVTLVGHKAAITATAIIDRGRNV
ISCGRDGVVHLWDCGTASSLCKIEDETKNVINACDLSSHQWQSDTMVGRS
EKECGTEGKLLLLAKENGTLKALDVHSRDKVFELKFASALNSCCFINEHR
VVTGQQNGSLSVVDIRNPRKAEYVLKHGKSPINCVKTYYKDRVLVGRSDG
ACSCISLDNPNQDSYKEQNLITQELIGSNHDPIYDIAFSNDHVYTACRDG
VVRKYCVDVTST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037405XLOC_037405Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059421TCONS_00059421Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR0110426-blade_b-propeller_TolB-like
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 372..406
e-value: 2.1
score: 14.9
coord: 174..213
e-value: 3.9E-6
score: 36.4
coord: 89..129
e-value: 0.046
score: 22.9
coord: 318..356
e-value: 220.0
score: 2.2
coord: 277..314
e-value: 16.0
score: 9.5
coord: 132..171
e-value: 1.4E-7
score: 41.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 133..171
e-value: 3.3E-6
score: 27.6
coord: 176..213
e-value: 0.0035
score: 18.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 181..213
score: 11.244
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 97..138
score: 10.909
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 139..180
score: 13.249
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 24..148
e-value: 2.2E-12
score: 46.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 250..410
e-value: 1.6E-17
score: 62.7
NoneNo IPR availableGENE3D2.80.10.50coord: 180..246
e-value: 1.0E-12
score: 47.4
NoneNo IPR availableGENE3D2.80.10.50coord: 149..179
e-value: 4.3E-11
score: 42.5
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 200..214
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 97..222
score: 27.922
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 98..407

Blast
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BLAST of TCONS_00059421-protein vs. Swiss-Prot (Human)
Match: PAAF1 (Proteasomal ATPase-associated factor 1 OS=Homo sapiens GN=PAAF1 PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.730e-91
Identity = 150/399 (37.59%), Postives = 229/399 (57.39%), Query Frame = 0 
Query:   14 ISVQYDWQSILRNTNEKAWVVCSQEGSPNIYSDVICKKHTQDVKVKTLDVSTNGVHAEILNGNNLKLN--YKTTTSHMISPKASFKDIHLKAIRSMNISPGGSLGVSSSEDGALYVWQTEDGKLRRTLDGHVSEVTHCRFFPSGMVVLSGGVDMRLKIWSVEDGSCPVTLVGHKAAITATAIIDRGRNVISCGRDGVVHLWDCGTASSLCKIEDETKNV----INACDLSSHQWQSDTMVGRSEKECGTEGKLLLLAKENGTLKALDVHSRDKVFELKFASALNSCCFINEHRVVTGQQNGSLSVVDIRNPRKAEYVLKHGKSPINCVKTYYKDRVLVGRSDGACSCISLDNPNQDSYKEQNL-ITQELIGSNHDPIYDIAFSNDHVYTACRDGVVRKY 405
            + +Q DW   LR    +AW+ C   G P++Y  + C+    D   +    ++ G     +N  ++ ++   +  +S  ++P  +F  IH K+I  ++IS  G LGVSSS DG + +WQ  +G+LRR L+GHV +V  CRFFPSG+VVLSGG+D +LKIWS ED SC VT  GHK  I  TAI+DRGRNV+S  RDG   LWDCG ++ L  + D   ++    + A D S +    + M   SE+E GTE K+LLLA+E+  L+ L + SR  VF    + A N C F++   ++ G Q+G++  +D+R+PR    V+    +P+  + +  +D  +  + DG+C  +           +Q+L    EL G++ DP+Y +A     +YT CRDG+VR+Y
Sbjct:    5 LRIQSDWAQALRKDEGEAWLSCHPPGKPSLYGSLTCQGIGLDGIPEV--TASEGFTVNEINKKSIHISCPKENASSKFLAPYTTFSRIHTKSITCLDISSRGGLGVSSSTDGTMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVDRGRNVVSASRDGTARLWDCGRSACLGVLADCGSSINGVAVGAADNSINLGSPEQM--PSEREVGTEAKMLLLAREDKKLQCLGLQSRQLVFLFIGSDAFNCCTFLSGFLLLAGTQDGNIYQLDVRSPRAPVQVIHRSGAPVLSLLS-VRDGFIASQGDGSCFIV-----------QQDLDYVTELTGADCDPVYKVATWEKQIYTCCRDGLVRRY 387
The following BLAST results are available for this feature:
BLAST of TCONS_00059421-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAAF11.730e-9137.59Proteasomal ATPase-associated factor 1 OS=Homo sap... [more]
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