TCONS_00059445-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059445-protein
Unique NameTCONS_00059445-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length150

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059445-protein ID=TCONS_00059445-protein|Name=TCONS_00059445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MSAKCVLEGEVVKGTITFKDLGNGQTHVTGEVTGLAPGLHGFHVHQFGDY
SGGCGTTGGHFNPSGKEHGGPDQENRHAGDLGNITADSNGVAKVDIKDSQ
IPLTGVNSIVGRAVVVHKDVDDLGAGGFEDSKTTGHAGARLACGVVGLSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037415XLOC_037415Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059445TCONS_00059445Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001424SOD_Cu_Zn_dom
IPR018152SOD_Cu/Zn_BS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004784superoxide dismutase activity
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 96..118
score: 60.6
coord: 77..86
score: 78.25
coord: 121..147
score: 65.71
coord: 41..63
score: 63.33
IPR001424Superoxide dismutase, copper/zinc binding domainGENE3D2.60.40.200coord: 1..150
e-value: 1.2E-54
score: 183.9
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 10..146
e-value: 8.8E-48
score: 162.0
IPR001424Superoxide dismutase, copper/zinc binding domainCDDcd00305Cu-Zn_Superoxide_Dismutasecoord: 1..143
e-value: 9.50664E-54
score: 167.823
IPR001424Superoxide dismutase, copper/zinc binding domainSUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 6..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..79
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00087SOD_CU_ZN_1coord: 41..51
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00332SOD_CU_ZN_2coord: 135..146

Blast
[Close]
BLAST of TCONS_00059445-protein vs. Swiss-Prot (Human)
Match: SODC (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 3.959e-52
Identity = 83/150 (55.33%), Postives = 108/150 (72.00%), Query Frame = 0 
Query:    3 AKCVLEGE-VVKGTITFKDL-GNGQTHVTGEVTGLAPGLHGFHVHQFGDYSGGCGTTGGHFNPSGKEHGGPDQENRHAGDLGNITADSNGVAKVDIKDSQIPLTGVNSIVGRAVVVHKDVDDLGAGGFEDSKTTGHAGARLACGVVGLSK 150
            A CVL+G+  V+G I F+    NG   V G + GL  GLHGFHVH+FGD + GC + G HFNP  ++HGGP  E RH GDLGN+TAD +GVA V I+DS I L+G + I+GR +VVH+  DDLG GG E+S  TG+AG+RLACGV+G+++
Sbjct:    5 AVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
The following BLAST results are available for this feature:
BLAST of TCONS_00059445-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODC3.959e-5255.33Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
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