TCONS_00059513-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059513-protein
Unique NameTCONS_00059513-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length999

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059513-protein ID=TCONS_00059513-protein|Name=TCONS_00059513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=999bp
XDENENPQTAYPEISESTTWGILGAHSTIKEKINSLSAVVGEDSENWDVN
EQDLNEKGNKKHATKRYYLEDELPNIICFNCGLKGHIGRDCTQERKLPTC
SLCGTDGHVRRHCPNEFCFNCMETGHRARDCTEERKKPRHLLRCKRCRNV
GHLKQDCPEYWRQYHVTIESGPIIMLSISSKSKEKSNKENRYCFNCASTK
HFGEECKYDRLNKGPVCGQFVVNYDPCTTEGHEVSKRDKSKRDKERKEKE
SGEKRKESRDLRESRRKNRDSSPIESPRKSSREKIKDRDSKDSPREKSTR
DSNESPKDSLRSRDSKKEKSRDEKEKSRTESPSDLSMERDKKRKKKKERE
ESPITLTSSSKNLDKDEKKKDSSEKEKDSKKRKRDSEKEEKTKSTSKDEE
IEPSKKKSKSSKDKESEKKDEKQRSYENIRRNMWISDDDNISIDRTESSE
APKKFSLADHLKIGFGLTSKKRKGESDVDKSNKKRKREEPSGSEKSNDKK
RKTKTKDENEQSSSQSSNPDNDIDNQSKTKVKREKTISDEKVKIDKTLIT
EKTDQPQQSKTAASRISNSTSTISSSKAKNNKTSEWMEKWEDYTNDAVNE
DDEKYELLQRVDSSEVTEIVIEDDENSNDSVATLDFDAPTTRPLAPNVIL
IDDDEDETSHTTQEQASPLHSPERTKVKPNKTISESPRSKKYKMNVEALN
NLKTILDSDSDSDSDDEWADDDGQQQSSSTLNPQPNFHDDDSDVSVTEVV
SLDGGDTHARDVEERTTLDYNQTPRVSPTTPPTFNNIVIGDDDEDEDEVN
TTNRDLTYYDPRAVYQEHLVIYNLVNATQTVSKLKEIDPVILPDTSPFSK
TGKRLDSRKQSSAPKEPFFIPWINREVIEGRMKGGLKMYANNDLKPFAKR
ITIRKWKAEAENYKEKLIEEEALRRGMSKKEMNTLSNRFFNELAVQHLRE
NAHLINNEAVQHRHKKVDWRRAKTKRKFARKKLKKKAVTEHFDLQKKDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037462XLOC_037462Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059513TCONS_00059513Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 363..390
NoneNo IPR availableCOILSCoilCoilcoord: 412..432
NoneNo IPR availableCOILSCoilCoilcoord: 903..923
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 192..208
e-value: 1.3
score: 10.4
coord: 117..133
e-value: 0.0012
score: 28.2
coord: 143..159
e-value: 0.043
score: 19.6
coord: 99..115
e-value: 0.037
score: 20.1
coord: 77..93
e-value: 0.0017
score: 27.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 118..133
e-value: 2.9E-5
score: 23.8
coord: 77..93
e-value: 6.1E-5
score: 22.8
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 184..353
e-value: 2.3E-5
score: 23.8
coord: 152..183
e-value: 0.0079
score: 15.7
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 47..85
e-value: 1.8E-7
score: 30.8
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 117..151
e-value: 2.3E-9
score: 36.6
coord: 86..116
e-value: 1.2E-11
score: 43.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 118..133
score: 9.933
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 100..115
score: 8.993
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 78..93
score: 10.098
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 143..159
score: 9.043
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 116..160
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 69..116

Blast
[Close]
BLAST of TCONS_00059513-protein vs. Swiss-Prot (Human)
Match: ZCHC7 (Zinc finger CCHC domain-containing protein 7 OS=Homo sapiens GN=ZCCHC7 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.592e-22
Identity = 75/248 (30.24%), Postives = 117/248 (47.18%), Query Frame = 0 
Query:   19 TWGILGAHSTIKEKINSLSAVV-------GEDSENWDVNEQDLNEK-GNKK---HATKRYYLEDELPNIICFNCGLKGHIGRDCTQERKLPTCSLCGTDGHVRRHCPNEFCFNCMETGHRARDCTEERKKPRHLL--RCKRCRNVGHLKQDCPEYWRQYHVTIESGPIIMLSISSKSKEKSNKENRYCFNCASTKHFGEEC-KYDRLNKGPVCGQFVVNYDPCTTEGHEVSKRDKSKRDKERKEKESG 252
            +W +LG     K+    L+ V        GED  NW ++++D+  +  N +     T+RYY  ++  NIIC NC  +GH+ ++C   RK+  C LC   GH+   CP   C  C         C       RH    +C RC  +GH    C E WRQYH+T + GP       S+    +     YC++CA   H+G EC + +  +  PV   F+  YD    + +E+ +R+K  + K +  K++G
Sbjct:  175 SWMLLGCEVDDKDDDILLNLVGCENSVTEGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANK--NIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLF-----RHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALA-----YCYHCAQKGHYGHECPEREVYDPSPV-SPFICYYD----DKYEIQEREKRLKQKIKVLKKNG 405
The following BLAST results are available for this feature:
BLAST of TCONS_00059513-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCHC74.592e-2230.24Zinc finger CCHC domain-containing protein 7 OS=Ho... [more]
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