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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00059559-protein ID=TCONS_00059559-protein|Name=TCONS_00059559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MGGDSKENTNKQLNECIRNARQMLDVSIKVANKKFDESIINARMKFEESI
ASSKHILNTSVTIAKQALEDSINEVKTHSTTTDDESFKMNSSKSFQQNTQ
TRNEGNSNAAHHSNSESTISTSNIIPNSADNGNICDKIKREIIDYANDGT
IERRILFSQRNDCNKESPMNNIKMETEDNVCGMNNPFLTVQPQEVNRLQE
NLNCRNFEVPTTVQTPSKSNYIDVDQDKLQERLKCTTCGIAFLTKYLLDK
HTCRPLILNKNLSRPHLRSDTKRLGQKQNTSVLESFAAIDRKFKCDFCKN
VFPNQKFLNNHVKRKHNPKVQFKCDICEKSFVKQARLNRHLNVHKGINFT
CKVCGSSFARKVHLNIHKGIKPFKCKFCGDSFRKKKALKKHEEMHAELKQ
GQVDSKLANT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 373..395
e-value: 0.0031
score: 26.7
coord: 349..369
e-value: 26.0
score: 9.6
coord: 322..344
e-value: 0.0011
score: 28.2
coord: 233..253
e-value: 250.0
score: 0.9
coord: 293..316
e-value: 0.0049
score: 26.1 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 375..395 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 324..344 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 349..368
score: 8.829 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 293..321
score: 9.099 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 373..400
score: 12.383 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 322..349
score: 12.071 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 349..397 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 316..367 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 349..367
e-value: 0.01
score: 16.1
coord: 322..344
e-value: 2.6E-4
score: 21.2 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 335..353
e-value: 2.2E-10
score: 40.3
coord: 244..309
e-value: 3.8E-7
score: 29.9 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 354..365
e-value: 3.7E-4
score: 19.8 |
| None | No IPR available | PFAM | PF13894 | zf-C2H2_4 | coord: 373..395
e-value: 6.9E-4
score: 20.2 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 76..243
e-value: 0.26
score: 10.8
coord: 310..334
e-value: 4.1E-8
score: 32.6 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 378..399
e-value: 7.0E-7
score: 28.8 |
| None | No IPR available | GENE3D | 2.60.260.40 | | coord: 366..377
e-value: 0.0065
score: 16.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 77..126 |
Blast
BLAST of TCONS_00059559-protein vs. Swiss-Prot (Human)
Match: GFI1B (Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 9.579e-18 Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 0
Query: 293 FKCDFCKNVFPNQKFLNNHVKRKHNPKVQFKCDICEKSFVKQARLNRHLNVH-KGINFTCKVCGSSFAR----KVHLNIHKGIKPFKCKFCGDSFRKKKALKKHEEMH 395
+ C C VF L HV+R H+ F CDIC K+F L +H +VH + +F C++CG +F R HL IH +P+ C+FCG F +K +KKH +H
Sbjct: 163 YHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACDICGKTFGHAVSLEQHTHVHSQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIH 270
The following BLAST results are available for this feature:
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