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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00059561-protein ID=TCONS_00059561-protein|Name=TCONS_00059561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
KKIKKIENTSNTRHMDREKGENVNKRIYECIRNARKMLDVSIKEANKNFE
ESVTDARSKFEESITSSKLILITSVAIAKKALDESIKEAEIHLEESDKDQ
RSLAAAGTKGISNKISRSTDPKHQKSTNVLSHKLKKDFNKKVISIRYPTN
KNVNNRDLENSIPISFQQTPVIGLSSQGNNSNVSNLNVTTLGLSESMSFI
QNNGISSSSNKTIVECATTQEGTNFQSSSCALQKNKSEEEGFSDLVEIKI
ELEESGDEGSFAVSNTNQIGVQPEDCGRGDAKDQNIDMTLSDSVSGCFEE
QLETETNQDQFECHACGIKFVTKYLLDKHYCRPYLRIKPKPVKNSDAEGN
ETVINLNFKCPLCENATFSSLKKLDLHKKRAHETIFQTQWKCDICEKFLS
NKGSLSRHLKMHNGLRPYKCAVCGKSFSQKYHYQYHLNTHSKPFKCEVCG
KSFSQRQSLNNHLYQHTLREDILARRNFGE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 79..99 |
| None | No IPR available | GENE3D | 2.20.28.10 | | coord: 400..421
e-value: 7.3E-9
score: 34.9 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 418..440
e-value: 4.6E-5
score: 23.5
coord: 391..412
e-value: 0.011
score: 16.1 |
| None | No IPR available | PFAM | PF13912 | zf-C2H2_6 | coord: 444..466
e-value: 8.2E-5
score: 22.4 |
| None | No IPR available | GENE3D | 2.20.28.10 | | coord: 422..448
e-value: 7.2E-15
score: 54.0 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 449..469
e-value: 2.9E-9
score: 36.2 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 370..399
e-value: 9.0E-7
score: 28.7
coord: 322..369
e-value: 7.6E-4
score: 19.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 94..128 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 390..412
e-value: 0.0038
score: 26.5
coord: 418..440
e-value: 0.0026
score: 27.0
coord: 358..382
e-value: 0.54
score: 19.3
coord: 311..331
e-value: 150.0
score: 3.0
coord: 444..466
e-value: 5.6E-5
score: 32.5 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 420..440 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 446..466 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 392..412 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 311..339
score: 8.538 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 390..417
score: 12.736 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 444..471
score: 13.048 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 418..445
score: 11.884 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 390..440 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 439..467 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 213..321
e-value: 0.032
score: 14.0 |
Blast
BLAST of TCONS_00059561-protein vs. Swiss-Prot (Human)
Match: HIC2 (Hypermethylated in cancer 2 protein OS=Homo sapiens GN=HIC2 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 2.728e-19 Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 0
Query: 358 FKCPLCENATFSSLKKLDLHKKRAHETIFQTQW-----KCDICEKFLSNKGSLSRHLKMHNGLRPYKCAVCGKSFSQKYHYQYHLNTHS--KPFKCEVCGKSFSQRQSLNNHLYQHT 467
FKC +CE T+ L H+K T W C+IC K + +G+++RH++ H GL+P+ C CG F+++Y H+ HS KP++C++CG F+Q+++L +HL HT
Sbjct: 505 FKCSVCEK-TYKDPATLRQHEK--------THWLTRPFPCNICGKMFTQRGTMTRHMRSHLGLKPFACDECGMRFTRQYRLTEHMRVHSGEKPYECQLCGGKFTQQRNLISHLRMHT 612
The following BLAST results are available for this feature:
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