TCONS_00059572-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059572-protein
Unique NameTCONS_00059572-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length132

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059572-protein ID=TCONS_00059572-protein|Name=TCONS_00059572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MADEEDVGDGMGGFDDDMDNAGDDDFEEPDENLGDDMPQVDVLPATDDNQ
PQAPKKKVTTPYMTKYERARVLGTRALQISMNAPVMVELEGETDPLQIAM
KELKARKIPIIIRRYLPDGSFEDWAIDELIID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037481XLOC_037481Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059572TCONS_00059572Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006110Pol_omega/K/RPB6
IPR012293RNAP_RPB6_omega
IPR028363RPB6
IPR006111RpoK/Rpb6
IPR020708DNA-dir_RNA_polK_14-18kDa_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005665DNA-directed RNA polymerase II, core complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006110RNA polymerase, subunit omega/K/RPB6SMARTSM01409RNA_pol_Rpb6_2coord: 57..110
e-value: 6.4E-6
score: 35.7
IPR006110RNA polymerase, subunit omega/K/RPB6PFAMPF01192RNA_pol_Rpb6coord: 58..110
e-value: 3.1E-16
score: 58.9
IPR006110RNA polymerase, subunit omega/K/RPB6SUPERFAMILY63562RPB6/omega subunit-likecoord: 15..132
IPR012293RNA polymerase subunit, RPB6/omegaGENE3D3.90.940.10coord: 1..132
e-value: 1.6E-50
score: 169.8
IPR028363DNA-directed RNA polymerase, subunit RPB6PIRSFPIRSF500154RPB6coord: 1..132
e-value: 6.6E-53
score: 176.6
IPR006111Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..132
e-value: 4.0E-47
score: 157.7
IPR006111Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunitHAMAPMF_00192RNApol_arch_Kcoord: 61..116
score: 18.194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved sitePROSITEPS01111RNA_POL_K_14KDcoord: 64..78

Blast
[Close]
BLAST of TCONS_00059572-protein vs. Swiss-Prot (Human)
Match: RPAB2 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo sapiens GN=POLR2F PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 6.614e-50
Identity = 82/116 (70.69%), Postives = 95/116 (81.90%), Query Frame = 0 
Query:   16 DDMDNAGDDDFEEPDENLGDDMPQVDVLPATDDNQPQAPKKKVTTPYMTKYERARVLGTRALQISMNAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSFEDWAIDELII 131
            DD++NA     EE  EN       V++LP+ +  +PQA +K++TTPYMTKYERARVLGTRALQI+M APVMVELEGETDPL IAMKELKARKIPIIIRRYLPDGS+EDW +DELII
Sbjct:   23 DDLENAE----EEGQEN-------VEILPSGE--RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELII 125
The following BLAST results are available for this feature:
BLAST of TCONS_00059572-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAB26.614e-5070.69DNA-directed RNA polymerases I, II, and III subuni... [more]
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