TCONS_00059597-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059597-protein
Unique NameTCONS_00059597-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059597-protein ID=TCONS_00059597-protein|Name=TCONS_00059597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MNFGIILTATLVAAVLGSVPLTPPEKCTRTWKKIGCFHDRIIPNRPLPYE
VANHRDPINKNWDGHLINWQKWPESLHALACKCAALTKGRGHRYFGLQFY
GECWTGPSLQYDRDGPSKSCIGIDYKACEDKSQTECVGKAFTNYIYDTHT
DVETPTDGGWSTWQSWSSCTKSCGGGARERTRSCTNPRPSNGGQSCTGEK
VEESSCNTDTCVPVCNKNIDIAVITDASTSVTSKNYLKVKEFVVKLTEEF
HVGKDQTHFAMIHFAWRAYLDFNFADKEFWDVYNLRNKIMSSKYTYGGTR
TDLALKMAEEKVFCDSCGTRGPNVPKVLIVITDGKSSYSSQTMTEASKGL
KGKKVTIISMGIGRAIDNDELVEIATDREHVFVADDFKYMIDKLNSITRL
SCQAQYDIDSFRMIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037487XLOC_037487Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059597TCONS_00059597Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00453VWFADOMAINcoord: 219..236
score: 29.17
coord: 327..335
score: 59.83
coord: 258..272
score: 13.21
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 195..206
score: 35.57
coord: 176..187
score: 45.76
coord: 158..171
score: 47.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..200
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 219..382
e-value: 6.42618E-35
score: 126.637
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 218..395
e-value: 5.0E-27
score: 105.8
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 220..388
e-value: 3.7E-32
score: 111.9
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 216..407
e-value: 2.1E-28
score: 98.9
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 220..400
score: 27.0
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 210..403
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 160..212
e-value: 1.4E-11
score: 54.5
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 156..211
e-value: 8.4E-17
score: 60.7
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 161..211
e-value: 1.3E-8
score: 34.8
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 157..212
score: 13.677
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 155..211

Blast
[Close]
BLAST of TCONS_00059597-protein vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.807e-18
Identity = 54/170 (31.76%), Postives = 89/170 (52.35%), Query Frame = 0 
Query:  220 DIAVITDASTSVTSKNYLKVKEFVVKLTEEFHVGKDQTHFAMIHFAWRAYLDFNFADKEFWDVYNLRNKIMSSKYTYGGTRTDLALKMAEEKVFCDSCGTRGPNVPKVLIVITDGKSSYSSQTMTEASKGLKGKKVTIISMGIGRAIDNDELVEIATD--REHVFVADDF 387
            DI  + D S S+   N++KV+ F+  L + F +  ++   +++ ++   + +F    K+F  V ++   I +  Y  G T T  A+    EK+F  S G+R  NVPKV+I+ITDGK   SS    + +  L+   V I ++G+  A+   EL  IA+     HVF  +DF
Sbjct:  440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTL--KKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRS-NVPKVMILITDGK---SSDAFRDPAIKLRNSDVEIFAVGVKDAV-RSELEAIASPPAETHVFTVEDF 602
The following BLAST results are available for this feature:
BLAST of TCONS_00059597-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COCA13.807e-1831.76Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL... [more]
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