TCONS_00059892-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059892-protein
Unique NameTCONS_00059892-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length773

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059892-protein ID=TCONS_00059892-protein|Name=TCONS_00059892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=773bp
MRLNTEYLKDTNLTDFVTCVGWLNSDEVYLAGDDHKVVKINQISGDATVV
VQLGEDVYATDLHWFPKSIGGKKQGGSEVYALTLTDGRFLFISKNGRVEK
TIDAHRGAILSGKWSYDGNALLTAGEDGQVKVWSRSGMLRSTLVSLAVPV
YSAVWSPNSDAVLHTNGKQLCIKPLQPTAKQNTWKAHEGIVLKVDWNSVN
NLIISGGEDCKYKVWDVYGRQLYTSMAHDYPITSLAWCPNGSVFAIGSYN
TLRLCDKSGWSHSLEKPNTGSLFNIAWSNDGTQLCAACGNSEVIVSNVIE
SRLEWKNFEVVNSQPKHIFVRDVLSEAKENLDFRDRVVKFALAFNHLVVT
TPAQCYIYSTQNWNTPMIFDLKSGSVSLIMLAEKHFLLVDDSSFQVYSYE
GRLISTPRYNGMRPDLMNEQIVTTSNDTIVIRDRNDEKALYIFEALNGKP
VGDGKPVKHPVEIVEISLNQEGSSTNRQLAIIDKNRDLYLRAIRHFGAEQ
VVKLTTMVSSMRWNDTCNILATISDHRLSVWYHPSIAYIDQDLVRKTKTI
GEQGEFGKDVHIMRFVNTYCTMRRGDGAMCSSSVSPHPAFLHKYVNEGKW
DEALRLCRFVKEDSLWACLAGMAASHKELSTAEIAYAAIEEVEKVQYINF
IKEIPTPEGRNAAMAIFCGQTQDAEAILLQSGLIYRAIQMYLDVYNWDRA
LEIAVKHKTHVDTVLGFRERYMKKCNKKEQNKKFLQFAQGVQVDWEKINA
KIEMEIEKESERPNAKPYNNVGR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037662XLOC_037662Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059892TCONS_00059892Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 498..532
e-value: 34.0
score: 7.4
coord: 177..216
e-value: 1.6E-5
score: 34.3
coord: 95..134
e-value: 1.4E-7
score: 41.2
coord: 257..297
e-value: 17.0
score: 9.3
coord: 218..256
e-value: 0.004
score: 26.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 181..216
e-value: 0.034
score: 14.9
coord: 227..254
e-value: 0.025
score: 15.3
coord: 100..134
e-value: 0.028
score: 15.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 102..134
score: 12.681
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 184..225
score: 11.578
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 2..161
e-value: 3.2E-16
score: 58.8
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 162..766
e-value: 2.4E-32
score: 111.3
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 102..225
score: 12.236
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 252..301
coord: 332..531
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 9..295

Blast
[Close]
BLAST of TCONS_00059892-protein vs. Swiss-Prot (Human)
Match: IFT80 (Intraflagellar transport protein 80 homolog OS=Homo sapiens GN=IFT80 PE=1 SV=3)

HSP 1 Score: 966.837 bits (2498), Expect = 0.000e+0
Identity = 430/762 (56.43%), Postives = 598/762 (78.48%), Query Frame = 0 
Query:    1 MRLNTEYLKDTNLTDFVTCVGWLNSDEVYLAGDDHKVVKINQISGDATVVVQLGEDVYATDLHWFPKSIGGKKQGGSEVYALTLTDGRFLFISKNGRVEKTIDAHRGAILSGKWSYDGNALLTAGEDGQVKVWSRSGMLRSTLVSLAVPVYSAVWSPNSDAVLHTNGKQLCIKPLQPTAKQNTWKAHEGIVLKVDWNSVNNLIISGGEDCKYKVWDVYGRQLYTSMAHDYPITSLAWCPNGSVFAIGSYNTLRLCDKSGWSHSLEKPNTGSLFNIAWSNDGTQLCAACGNSEVIVSNVIESRLEWKNFEVVNSQPKHIFVRDVLSEAKENLDFRDRVVKFALAFNHLVVTTPAQCYIYSTQNWNTPMIFDLKSGSVSLIMLAEKHFLLVDDSSFQVYSYEGRLISTPRYNGMRPDLMNEQIVTTSNDTIVIRDRNDEKALYIFEALNGKPVGDGKPVKHPVEIVEISLNQEGSSTNRQLAIIDKNRDLYLRAIRHFGA-EQVVKLTTMVSSMRWNDTCNILATISDHRLSVWYHPSIAYIDQDLVRKTKTIGEQGEFGKDVHIMRFVNTYCTMRRGDGAMCSSSVSPHPAFLHKYVNEGKWDEALRLCRFVKEDSLWACLAGMAASHKELSTAEIAYAAIEEVEKVQYINFIKEIPTPEGRNAAMAIFCGQTQDAEAILLQSGLIYRAIQMYLDVYNWDRALEIAVKHKTHVDTVLGFRERYMKKCNKKEQNKKFLQFAQGVQVDWEKINAKIEMEIEKESE 761
            MRL    LK+    + V+CVGW  ++E+Y   DDH++VK N ++ + T +V+L +D+Y  D HWFPKS+G KKQ  +E + LT +DG+F  ISK GRVEK+++AH GA+L+G+W+Y+G AL+T GEDGQ+K+WS++GMLRSTL     PVYS  W P+S+ VL+T GKQL IKPLQP AK   WKAH+GI+LKVDWNSVN+LI+S GEDCKYKVWD YGR LY S  H++PITS+AW P+G +FA+GS++TLRLCDK+GWS++LEKPNTGS+FNIAWS DGTQ+  ACGN  V+ ++V+E   EWKNF+V  ++ + + VR+VL++A + L+FRDRV+K +L + HLVV+T  QCY++ST+NWNTP+IFDLK G+VSLI+ AE+HFLLVD SS  +YSYEGR IS+P++ GMR D++N Q V+ SNDTI IRD+ DEK +++FEA  GKP+GDGK + H  EI+EI+L+Q+G + +R++A IDKNRDL + +++ FG  EQ++KL TMV ++ WNDTCNIL  + D R  VWY+P+  Y+D+D++ KT    +  EF K+ HI+ FV    T+RR DG++   S++P+PA LH+YV+  KW++A+RLCRFVKE ++WACLA MA ++++++TAEIAYAAI E++KVQYIN IK +P+ E + A + +F G  Q+AE +LLQ+GL+Y+AIQ+ +++YNW+RALE+AVK+KTHVDTVL +R+++++   K+E NK++L +A+G+Q+DWEKI AKIEMEI KE E
Sbjct:    1 MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETTQIVKLPDDIYPIDFHWFPKSLGVKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQIKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRPLYNSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQHWEWKNFQVTLTKRRAMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSLQCYVFSTKNWNTPIIFDLKEGTVSLILQAERHFLLVDGSSIYLYSYEGRFISSPKFPGMRTDILNAQTVSLSNDTIAIRDKADEKIIFLFEASTGKPLGDGKFLSHKNEILEIALDQKGLTNDRKIAFIDKNRDLCITSVKRFGKEEQIIKLGTMVHTLAWNDTCNILCGLQDTRFIVWYYPNTVYVDRDILPKTLYERDASEFSKNPHIVSFVGNQVTIRRADGSLVHISITPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVANRDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQAIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLHYAEGLQIDWEKIKAKIEMEITKERE 762
The following BLAST results are available for this feature:
BLAST of TCONS_00059892-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT800.000e+056.43Intraflagellar transport protein 80 homolog OS=Hom... [more]
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