TCONS_00059905-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059905-protein
Unique NameTCONS_00059905-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059905-protein ID=TCONS_00059905-protein|Name=TCONS_00059905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=678bp
MPKFKLKHIVSFSSEDLKNPAENLLKPETYFKWRSATSGERQVSAIIQLE
KANKIHSVDVGNNGSAFVEVLVGRSSWAASEEFKVLQPASSFMSPADSKA
NKDLYRVRMFGNEGFTKSVSEEKWDQVKFVCTQPYNQNEAYGLSFVTIHS
PPEPVEKPKEKTIQLGRFKLRSTSDDEEDTISTGSFFRDKKLPKQNIETP
KRSMAATCRDARTSMMNNTDSSTVKTKGESTPIAKTISISNDSRNKVAAN
LLSPAPTTSINSTIKTKSTPKANSTPTTNSTPKTKTPNKQEKTKRKIETD
QPSSSMINRPPPSKKIKVEPKKVKKIKTKKRNVPKNKILDKVVFVLSGFV
NPQRGEIRDLAMEMGARFSQQWDNNTCTHLICAFPNTPKFREVKGKGKIV
RETWIKSCYRAKRRLNTQSFRLDGGGESSFESTDSEDDTPPVQKNLIKNE
DSLMKESADQHIKKEDSPPPLPSVDDQKESPSSEYDTEDELEKLRNEQEQ
PQITEKALEKEKQANTDVYDCTTDEDDDGDDVSKNANADVSKKENVDVNK
NEKMDARSSTEAEEVKNKKLKNLNRDQDLNLSQELPDFLEEKGFLLYGKL
SDKERRLCKRYITAYGGTLHEYMGDGVTYVLSKNDWGSDFDDALNENKDL
VFLRPTWLFKCHEEQKLVDTEAHIIPKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037670XLOC_037670Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059905TCONS_00059905Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR008979Galactose-bd-like
IPR002706Xrcc1_N
Vocabulary: Biological Process
TermDefinition
GO:0000012single strand break repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000012 single strand break repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003684 damaged DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 586..665
e-value: 4.3
score: 16.1
coord: 336..412
e-value: 1.6E-12
score: 57.6
IPR001357BRCT domainGENE3D3.40.50.10190coord: 335..566
e-value: 6.1E-21
score: 74.2
IPR001357BRCT domainPFAMPF16589BRCT_2coord: 601..672
e-value: 5.3E-10
score: 39.5
IPR001357BRCT domainGENE3D3.40.50.10190coord: 567..678
e-value: 4.9E-12
score: 45.1
IPR001357BRCT domainPFAMPF12738PTCB-BRCTcoord: 342..391
e-value: 2.3E-8
score: 33.7
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 334..422
score: 16.706
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 584..675
score: 16.01
IPR001357BRCT domainCDDcd00027BRCTcoord: 340..410
e-value: 5.26558E-9
score: 52.7091
IPR001357BRCT domainCDDcd00027BRCTcoord: 594..661
e-value: 9.70017E-5
score: 39.9975
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 318..423
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 585..676
IPR008979Galactose-binding domain-likeGENE3D2.60.120.260coord: 1..150
e-value: 1.3E-60
score: 203.2
IPR008979Galactose-binding domain-likeSUPERFAMILY49785Galactose-binding domain-likecoord: 1..150
IPR002706DNA-repair protein Xrcc1, N-terminalPFAMPF01834XRCC1_Ncoord: 1..148
e-value: 3.3E-58
score: 195.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 420..563

Blast
[Close]
BLAST of TCONS_00059905-protein vs. Swiss-Prot (Human)
Match: XRCC1 (DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 9.344e-105
Identity = 230/714 (32.21%), Postives = 366/714 (51.26%), Query Frame = 0 
Query:    1 MPKFKLKHIVSFSSEDLKNPAENLLKPETYFKWRSATSGERQVSAIIQLEKANKIHSVDVGNNGSAFVEVLVGRSSWAASEE-FKVLQPASSFMSPADSKANKDLYRVRMFGNEGFTKSVSEEKWDQVKFVCTQPYNQNEAYGLSFVTIHSPPE--PVEKPKEKTI--QLGRFKLRSTSDDEEDTISTGSFFRDKKLPKQNIETPKRSMAATCRDARTSMMNNTDSSTVKTKGESTPIAKTISISNDSRNKVAANLLSPAPTTSINSTIKTKSTPKANSTPTTNSTPKTKTPNK-----QEKTKRKIETDQPSSSMINRPPPSKK---IKVEPKKVKKIKTKKRNVPK--NKILDKVVFVLSGFVNPQRGEIRDLAMEMGARFSQQWDNNTCTHLICAFPNTPKFREVKG-KGKIVRETWIKSCYRAKRRLNTQSFRLDGGGESSFE-----STDSEDDTPPVQKNLIKNEDSLMKESADQHIKKEDSP------PPLPSVDDQKESPSSEY---------DTEDELEKLRNEQEQPQITEKALEKEKQANTDVYDCTTDEDDDGDDVSKNANADVSKKENVDVNKNEKMDARSSTEAEEVKNKKLKNLNRDQDLNLSQELPDFLEEKGFLLYGKLSDKERRLCKRYITAYGGTLHEYMGDGVTYVLSKNDWGSDFDDALNENKDLVFLRPTWLFKCHEEQKLVDTEAH-IIPK 677
            MP+ +L+H+VS SS+D  + AENLLK +TY KWR+A +GE+ +S ++QLEK  +IHSVD+GN+GSAFVEVLVG S+  A E+ ++VL   SSFMSP++S++  +  RVRMFG +   ++ +E++WD+VK VC+QPY+++  +GLSFV  HSPP+    E P +K    +LG+F+++   D+  +++  G+ F                          S +N T   T      S P     S +  +    +A   +   + +I ST K + +PK       N   K KTP+K          ++ +   P+ +    P P++    +  +P+       + R  P+   KIL  VV VLSGF NP R E+RD A+E+GA++   W  ++ THLICAF NTPK+ +V G  G+IVR+ W+  C+R +RRL ++ + + G G SS E     S  S D+ P + +   + +    + +     +K  +P       P+   D   E   SE          DTEDEL ++  ++E      +    +++   D Y  +TDE+ D ++  +  +  V                                           ELPDF + K F LYG+    ERR   RY+TA+ G L + M D V +V++  +W   F++AL +N  L F+RP W++ C+E+QKL+  + + ++P+
Sbjct:    1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKE-EDESANSLRPGALF-------------------------FSRINKTSPVTA-----SDPAGP--SYAAATLQASSAASSASPVSRAIGSTSKPQESPKGKRKLDLNQEEK-KTPSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVTGKPRGEGTEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDS-THLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRYLMAGPGSSSEEDEASHSGGSGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEETKAASPVLQEDIDIEGVQSEGQDNGAEDSGDTEDELRRVAEQKEH-----RLPPGQEENGEDPYAGSTDENTDSEEHQEPPDLPVP------------------------------------------ELPDFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDNMSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQ 632
The following BLAST results are available for this feature:
BLAST of TCONS_00059905-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRCC19.344e-10532.21DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 ... [more]
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