Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00059910-protein ID=TCONS_00059910-protein|Name=TCONS_00059910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp MAGVVFEDIFDVKDIDPGGKKFDRVSRLHCESESFKMDLILDVNTQIYPV DLGEKFRLVLATTLREDGTPDDGEYNSADNAPSRADQFEYVMHGKVYRID AENSGGGDHFGNRLSAYVSYGGLLMRLQGDANNLHDQLRKTNGFRIWRNE TWNFQIITEHFMWIF Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0006351 transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006351
transcription, DNA-templated
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
M A G V V F E D I F D V K D I D P G G K K F D R V S R L H C E S E S F K M D L I L D V N T Q I Y P V D L G E K F R L V L A T T L R E D G T P D D G E Y N S A D N A P S R A D Q F E Y V M H G K V Y R I D A E N S G G G D H F G N R L S A Y V S Y G G L L M R L Q G D A N N L H D Q L R K T N G F R I W R N E T W N F Q I I T E H F M W I F 20 40 60 80 100 120 140 160 Expect = 3.4E-68 / Score = 242.5 Expect = 2.2E-47 / Score = 160.7 Expect = 1.3E-47 / Score = 159.4 Expect = 9.7E-55 / Score = 184.1 Score = Sequence SM00658 PF03870 PIRSF000779 G3DSA:2.40.50.140 SSF50249
Blast
BLAST of TCONS_00059910-protein vs. Swiss-Prot (Human)
Match:
RPAB3 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=POLR2H PE=1 SV=4)
HSP 1 Score: 222.246 bits (565), Expect = 1.392e-75
Identity = 108/135 (80.00%), Postives = 118/135 (87.41%), Query Frame = 0
Query: 1 MAGVVFEDIFDVKDIDPGGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDLGEKFRLVLATTLREDGTPDDGEYNSADNAPSRADQFEYVMHGKVYRIDAENSGGGDHFGNRLSAYVSYGGLLMRLQGDANNLH 135
MAG++FEDIFDVKDIDP GKKFDRVSRLHCESESFKMDLILDVN QIYPVDLG+KFRLV+A+TL EDGT DDGEYN D+ PSRADQFEYVM+GKVYRI+ + + RLSAYVSYGGLLMRLQGDANNLH
Sbjct: 1 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETST--EAATRLSAYVSYGGLLMRLQGDANNLH 133
The following BLAST results are available for this feature:
BLAST of TCONS_00059910-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M A G V V F E D I F D V K D I D P G G K K F D R V S R L H C E S E S F K M D L I L D V N T Q I Y P V D L G E K F R L V L A T T L R E D G T P D D G E Y N S A D N A P S R A D Q F E Y V M H G K V Y R I D A E N S G G G D H F G N R L S A Y V S Y G G L L M R L Q G D A N N L H D Q L R K T N G F R I W R N E T W N F Q I I T E H F M W I F 20 40 60 80 100 120 140 160 Expect = 1.39e-75 / Id = 80.00 Sequence RPAB3
Match Name E-value Identity Description
RPAB3 1.392e-75 80.00 DNA-directed RNA polymerases I, II, and III subuni... [more]
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