TCONS_00060966-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060966-protein
Unique NameTCONS_00060966-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060966-protein ID=TCONS_00060966-protein|Name=TCONS_00060966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MSDTKPKKKTPKVEKSEKPLKKKKEKPPPPEKRLKRLRTSMGAASDRIGR
ALSQRLFLVKRDEIIRDEIGAIRAGFTVLGSTGNVYRVTIGRLVQCTCPD
HQKGNICKHIIFVMVRVLKQSRTSSLIIQAALLSTELESIFANVSTANDA
SVXSRTSSLIIQAALLSTELESIFANVSTANDAAVLATTEVRAVFGEKPA
PEEKEKDGKRKEITDDDDCGVCFEALIEANEKDLDWCKDGCGKSIHKQCW
SMWRKQGHNTCVYCRAEWKVVSAATATQNIKNGGGQRLSEEGYVNVAHLQ
GQSLERDCSTYSEWGSWNKSRRWNRRW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038271XLOC_038271Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060966TCONS_00060966Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 86..114
e-value: 1.9E-5
score: 24.1
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 86..118
score: 10.794
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 201..294
e-value: 2.5E-12
score: 45.7
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 218..268
e-value: 0.00192469
score: 34.3436
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 212..271

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060966-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top