|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060966 ID=TCONS_00060966|Name=TCONS_00060966|organism=Clytia hemisphaerica|type=transcript|length=2554bp
gtttttactacatcagcatcatcagacctttcaatcaaaacaaaaccttt
actATAATATCAGCTAAAACTAtgcttcttttcttttcatttagactatt
taaataaagtaaaaaataacaatgaaagAAGAATTAAAGAAATATCCACT
CCGTTCAAGAGGCGGACCCTCAGTGTCCAACGTGCCTAGTCAACCACAAG
GAACAACCAAGCTCGTCATTCCTCTATCCACCATCAATGTCAACAATAGC
TCACCACAAGTAGTTCTCCCACCAAGCCTCGCTAACCACCCATCTTCAGC
CAAAATAAAAGCCGCATTGAACAAAGCTGTTTCAACCGCACTCGCCAAAA
GGTTATCAACCTCATCAACAtcaagaaaaccgatttttccaTCTCCTTCT
TCTCTCAAGGTAGCTTCATCTTCCACAACTGCACAACCAAACAAATCTGT
TGTTCCACTATCAGTGCTCCCTAATAGACTAGCTCCAAATATTGCAAATG
CTCCTTCATCCACACAATCTAAATCAGCCAGTCTACCTGGCGCATCAACT
CTAGTTTNCTGCAAATGTTCCTTCATCCACACAATCTAAATCAGCCAGTC
TACCTGGCGCATCAACTATAGTTTCTCCAGTTGAAGGATCCTCAGCTGTA
CCGTCCAAAGCGTTGGTTATAAAATCTTCATCGCCCAAACCAGTGGCTAT
CAAACCACTTAGACCATCTTATTCTGGCTCAGTTCCCTTATCAGTTTTGC
CATCCTCGGCATTTCAACCACCCACTAGCAAGGTTTATTCCAATATAGCA
TCTCAGATATCAACTGTCAAGTCGTTTTCAACTATTACAGCAGCTCAAAT
ACCCAAAAGCAAGCTGTACTCTACTATTGCGGCTCTTCAACCACTCACtg
gcaaatcaaacaaaattacAGATCATGATTATTGCCCTACTGAAACCAAA
CAAGGTCAAAAACGCAAGTCGAAAAATGTTGACGATGAAAGTGCTAGTTG
TAGCAAAAATGAGGGCTACACAAAAGTAAAAGTTCCAAAGTATGAGATGT
CGGACACTAAACCAAAAAAGAAGACACCAAAAgtagaaaaatctgaaaaa
cctctcaagaagaaaaaagagaagCCTCCGCCACCTGAAAAACGTTTGAA
ACGTTTGCGAACATCTATGGGTGCTGCCAGTGACCGCATTGGTCGAGCAT
TAAGCCAGCGGTTATTCCTGGTCAAACGTGACGAGATTATTCGTGATGAA
ATAGGTGCCATTCGTGCTGGATTCACCGTGCTTGGGAGTACTGGAAACGT
CTACCGTGTCACTATCGGACGTCTTGTGCAATGTACCTGCCCTGATCATC
AGAAAGGAAACATCTGCAAACACATTATCTTTGTAATGGTTCGCGTACTC
AAGCAATCGAGGACGTCATCTCTTATCATTCAAGCTGCGCTCTTGTCCAC
AGAGCTGGAATCGATATTCGCCAACGTATCAACTGCAAATGATGCTTCAG
TGNAATCGCGGACGTCATCTCTTATCATTCAAGCTGCGCTCTTGTCCACA
GAGCTGGAATCGATATTCGCCAACGTATCAACTGCAAATGATGCTGCAGT
TTTAGCCACAACTGAAGTGAGAGCCGTGTTCGGAGAGAAGCCGGCACCGG
AGGAGAAAGAGAAGGACGGGAAACGGAAGGAGATCACCGATGACGATGAT
TGTGGTGTGTGTTTCGAAGCGTTGATTGAAGCCAATGAGAAGGATTTGGA
TTGGTGCAAAGATGGCTGTGGCAAATCTATCCATAAACAATGTTGGAGCA
TGTGGAGGAAACAGGGCCACAATACGTGTGTTTACTGTCGTGCTGAATGG
AAAGTTGTGTCGGCAGCTACAGCAACCCAAAACATCAAAAACGGTGGAGG
ACAAAGGTTGTCAGAAGAAGGGTATGTCAACGTAGCCCACCTTCAGGGAC
AGTCTTTGGAAAGAGATTGTTCAACGTATTCTGAGTGGGGGTCGTGGAAC
AAATCCCGTCGATGGAATCGTAGGTGGTGAGTTAGGAAATAGACGACACA
TTTGGAGTATAAgaaaactgaaaacttttttaaagtaGAGCAAAGCAAAC
TGTTCGAGATTCGGACGTTGATCTTTTGGCGTATCTTGTGGAATGTTGAC
GTATTGTATCTTTGCATTTgttttattgtaaatatttttgagtTATCTTA
ATTTTTActactgtatatatttttaggtgaaaatttgatttctttagGTT
ACTTTTGGTTTCTTTTAGTTAGCTGCTATTTTATTTGTCATAAAGTTTTT
GTATGGACCTTCCTACAGTTAAGCCCATCGTAGAATATTGACTTGTTTGT
AAAAGCTTTAAATGAACTAAAATGTATAGAAaattgaaatcttaaaattt
caaaacatacaaaaacTTACAAATTTTAGGTAGtgattttgtaacttttt
agCGTGTCAACTATTTAAACGTGTTatcatttcttcatttttattagACT
GTATATATTGAGAAAGTAGTATTGTTTACTTTTGCTGAAGAAAACTGaag
aaag Run BLAST on NCBI protein sequence of TCONS_00060966-protein >TCONS_00060966-protein ID=TCONS_00060966-protein|Name=TCONS_00060966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MSDTKPKKKTPKVEKSEKPLKKKKEKPPPPEKRLKRLRTSMGAASDRIGR
ALSQRLFLVKRDEIIRDEIGAIRAGFTVLGSTGNVYRVTIGRLVQCTCPD
HQKGNICKHIIFVMVRVLKQSRTSSLIIQAALLSTELESIFANVSTANDA
SVXSRTSSLIIQAALLSTELESIFANVSTANDAAVLATTEVRAVFGEKPA
PEEKEKDGKRKEITDDDDCGVCFEALIEANEKDLDWCKDGCGKSIHKQCW
SMWRKQGHNTCVYCRAEWKVVSAATATQNIKNGGGQRLSEEGYVNVAHLQ
GQSLERDCSTYSEWGSWNKSRRWNRRW Run BLAST on NCBI transcript from alignment at scaffold_350:109923..113094- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060966 ID=TCONS_00060966|Name=TCONS_00060966|organism=Clytia hemisphaerica|type=transcript|length=3172bp|location=Sequence derived from alignment at scaffold_350:109923..113094- (Clytia hemisphaerica)
GTTTTTACTACATCAGCATCATCAGACCTTTCAATCAAAACAAAACCTTT
ACTATAATATCAGCTAAAACTATGCTTCTTTTCTTTTCATTTAGACTATT
TAAATAAAGTAAAAAATAACAATGAAAGAAGAATTAAAGAAATATCCACT
CCGTTCAAGAGGCGGACCCTCAGTGTCCAACGTGCCTAGTCAACCACAAG
GAACAACCAAGCTCGTCATTCCTCTATCCACCATCAATGTCAACAATAGC
TCACCACAAGTAGTTCTCCCACCAAGCCTCGCTAACCACCCATCTTCAGC
CAAAATAAAAGCCGCATTGAACAAAGCTGTTTCAACCGCACTCGCCAAAA
GGTTATCAACCTCATCAACATCAAGAAAACCGATTTTTCCATCTCCTTCT
TCTCTCAAGGTAGCTTCATCTTCCACAACTGCACAACCAAACAAATCTGT
TGTTCCACTATCAGTGCTCCCTAATAGACTAGCTCCAAATATTGCAAATG
CTCCTTCATCCACACAATCTAAATCAGCCAGTCTACCTGGCGCATCAACT
CTAGTTTNCTGCAAATGTTCCTTCATCCACACAATCTAAATCAGCCAGTC
TACCTGGCGCATCAACTATAGTTTCTCCAGTTGAAGGATCCTCAGCTGTA
CCGTCCAAAGCGTTGGTTATAAAATCTTCATCGCCCAAACCAGTGGCTAT
CAAACCACTTAGACCATCTTATTCTGGCTCAGTTCCCTTATCAGTTTTGC
CATCCTCGGCATTTCAACCACCCACTAGCAAGGTTTATTCCAATATAGCA
TCTCAGATATCAACTGTCAAGTCGTTTTCAACTATTACAGCAGCTCAAAT
ACCCAAAAGCAAGCTGTACTCTACTATTGCGGCTCTTCAACCACTCACTG
GCAAATCAAACAAAATTACAGATCATGATTATTGCCCTACTGAAACCAAA
CAAGGTCAAAAACGCAAGTCGAAAAATGTTGACGATGAAAGTGCTAGTTG
TAGCAAAAATGAGGGCTACACAAAAGTAAAAGTTCCAAAGTATGAGATGT
CGGACACTAAACCAAAAAAGAAGACACCAAAAGTAGAAAAATCTGAAAAA
CCTCTCAAGAAGAAAAAAGAGAAGCCTCCGCCACCTGAAAAACGTTTGAA
ACGTTTGCGAACATCTATGGGTGCTGCCAGTGACCGCATTGGTCGAGCAT
TAAGCCAGCGGTTATTCCTGGTCAAACGTGACGAGATTATTCGTGATGAA
ATAGGTGCCATTCGTGCTGGATTCACCGTGCTTGGGAGTACTGGAAACGT
CTACCGTGTCACTATCGGACGTCTTGTGCAATGTACCTGCCCTGATCATC
AGAAAGGAAACATCTGCAAACACATTATCTTTGTAATGGTTCGCGTACTC
AAGCAATCGAGGACGTCATCTCTTATCATTCAAGCTGCGCTCTTGTCCAC
AGAGCTGGAATCGATATTCGCCAACGTATCAACTGCAAATGATGCTTCAG
TGNAATCGCGGACGTCATCTCTTATCATTCAAGCTGCGCTCTTGTCCACA
GAGCTGGAATCGATATTCGCCAACGTATCAACTGCAAATGATGCTGCAGT
TTTAGCCACAACTGAAGTGAGAGCCGTGTTCGGAGAGAAGCCGGCACCGG
AGGAGAAAGAGAAGGACGGGAAACGGAAGGAGATCACCGATGACGATGAT
TGTGGTGTGTGTTTCGAAGCGTTGATTGAAGCCAATGAGAAGGATTTGGA
TTGGTGCAAAGATGGCTGTGGCAAATCTATCCATAAACAATGTTGGAGCA
TGTGGAGGAAACAGGTACCTCTATTTTTGTTCTCTCGTAGCCCATGTATT
TCTATATTTTTTTTTTCACTCTTCTTTTGTTTGTTTAAAACAAGGCATTT
ATGAATATTAAAATCGATTAGATATCCCTGTGTCACAGACCCGGTGGGAC
CCCTTTTTCAGAAGGAAAAAATCTCCGATGGAAAAATACCCTACGATTTC
AGCCCCACTTGGAAATTGACTTTGTTTCATCCCCATTCGAAATTCAATAT
AAAAAAATTTCACTCCAAAANGACTTTGTTTCATCCCCATTCGAAATTCA
ATATAAAAAATTTCACTCCAAAACAATCCCCACAATGGATTTTTTGAGCT
TGGCAATAGAAGTTCTATTCCTGCTATGACAAAAAGTTCCACTGGGAGTG
TGAGACAGGGGTATCATTAGCACTTTGTTTCACGTAATAAACTGCTAAGC
TTTACTCACAGACGTGATGATACTTTCATGGAAGAAATTTCCGAGATTTC
TTGTGAATCACTTGCTTGAAGATTTTCTTAACTTTCTTCACCTCTTCATA
ACCCATGTTTTAGATGGAGAATAGCTCTTCGAAAGCAATACAAATTAAAA
TGATAGAGTTTTCCATTTTTCTTTTTCTATAGGGCCACAATACGTGTGTT
TACTGTCGTGCTGAATGGAAAGTTGTGTCGGCAGCTACAGCAACCCAAAA
CATCAAAAACGGTGGAGGACAAAGGTTGTCAGAAGAAGGGTATGTCAACG
TAGCCCACCTTCAGGGACAGTCTTTGGAAAGAGATTGTTCAACGTATTCT
GAGTGGGGGTCGTGGAACAAATCCCGTCGATGGAATCGTAGGTGGTGAGT
TAGGAAATAGACGACACATTTGGAGTATAAGAAAACTGAAAACTTTTTTA
AAGTAGAGCAAAGCAAACTGTTCGAGATTCGGACGTTGATCTTTTGGCGT
ATCTTGTGGAATGTTGACGTATTGTATCTTTGCATTTGTTTTATTGTAAA
TATTTTTGAGTTATCTTAATTTTTACTACTGTATATATTTTTAGGTGAAA
ATTTGATTTCTTTAGGTTACTTTTGGTTTCTTTTAGTTAGCTGCTATTTT
ATTTGTCATAAAGTTTTTGTATGGACCTTCCTACAGTTAAGCCCATCGTA
GAATATTGACTTGTTTGTAAAAGCTTTAAATGAACTAAAATGTATAGAAA
ATTGAAATCTTAAAATTTCAAAACATACAAAAACTTACAAATTTTAGGTA
GTGATTTTGTAACTTTTTAGCGTGTCAACTATTTAAACGTGTTATCATTT
CTTCATTTTTATTAGACTGTATATATTGAGAAAGTAGTATTGTTTACTTT
TGCTGAAGAAAACTGAAGAAAG Coding sequence (CDS) from alignment at scaffold_350:109923..113094- >TCONS_00060966 ID=TCONS_00060966|Name=TCONS_00060966|organism=Clytia hemisphaerica|type=CDS|length=1968bp|location=Sequence derived from alignment at scaffold_350:109923..113094- (Clytia hemisphaerica)
GGCCACAATACGTGTGTTTACTGTCGTGCTGAATGGAAAGTTGTGTCGGC
AGCTACAGCAACCCAAAACATCAAAAACGGTGGAGGACAAAGGTTGTCAG
AAGAAGGGTATGTCAACGTAGCCCACCTTCAGGGACAGTCTTTGGAAAGA
GATTGTTCAACGTATTCTGAGTGGGGGTCGTGGAACAAATCCCGTCGATG
GAATCGTAGGTGGTGAATGTCGGACACTAAACCAAAAAAGAAGACACCAA
AAGTAGAAAAATCTGAAAAACCTCTCAAGAAGAAAAAAGAGAAGCCTCCG
CCACCTGAAAAACGTTTGAAACGTTTGCGAACATCTATGGGTGCTGCCAG
TGACCGCATTGGTCGAGCATTAAGCCAGCGGTTATTCCTGGTCAAACGTG
ACGAGATTATTCGTGATGAAATAGGTGCCATTCGTGCTGGATTCACCGTG
CTTGGGAGTACTGGAAACGTCTACCGTGTCACTATCGGACGTCTTGTGCA
ATGTACCTGCCCTGATCATCAGAAAGGAAACATCTGCAAACACATTATCT
TTGTAATGGTTCGCGTACTCAAGCAATCGAGGACGTCATCTCTTATCATT
CAAGCTGCGCTCTTGTCCACAGAGCTGGAATCGATATTCGCCAACGTATC
AACTGCAAATGATGCTTCAGTGNAATCGCGGACGTCATCTCTTATCATTC
AAGCTGCGCTCTTGTCCACAGAGCTGGAATCGATATTCGCCAACGTATCA
ACTGCAAATGATGCTGCAGTTTTAGCCACAACTGAAGTGAGAGCCGTGTT
CGGAGAGAAGCCGGCACCGGAGGAGAAAGAGAAGGACGGGAAACGGAAGG
AGATCACCGATGACGATGATTGTGGTGTGTGTTTCGAAGCGTTGATTGAA
GCCAATGAGAAGGATTTGGATTGGTGCAAAGATGGCTGTGGCAAATCTAT
CCATAAACAATGTTGGAGCATGTGGAGGAAACAGGGCCACAATACGTGTG
TTTACTGTCGTGCTGAATGGAAAGTTGTGTCGGCAGCTACAGCAACCCAA
AACATCAAAAACGGTGGAGGACAAAGGTTGTCAGAAGAAGGGTATGTCAA
CGTAGCCCACCTTCAGGGACAGTCTTTGGAAAGAGATTGTTCAACGTATT
CTGAGTGGGGGTCGTGGAACAAATCCCGTCGATGGAATCGTAGGTGGTGA
ATGTCGGACACTAAACCAAAAAAGAAGACACCAAAAGTAGAAAAATCTGA
AAAACCTCTCAAGAAGAAAAAAGAGAAGCCTCCGCCACCTGAAAAACGTT
TGAAACGTTTGCGAACATCTATGGGTGCTGCCAGTGACCGCATTGGTCGA
GCATTAAGCCAGCGGTTATTCCTGGTCAAACGTGACGAGATTATTCGTGA
TGAAATAGGTGCCATTCGTGCTGGATTCACCGTGCTTGGGAGTACTGGAA
ACGTCTACCGTGTCACTATCGGACGTCTTGTGCAATGTACCTGCCCTGAT
CATCAGAAAGGAAACATCTGCAAACACATTATCTTTGTAATGGTTCGCGT
ACTCAAGCAATCGAGGACGTCATCTCTTATCATTCAAGCTGCGCTCTTGT
CCACAGAGCTGGAATCGATATTCGCCAACGTATCAACTGCAAATGATGCT
TCAGTGNAATCGCGGACGTCATCTCTTATCATTCAAGCTGCGCTCTTGTC
CACAGAGCTGGAATCGATATTCGCCAACGTATCAACTGCAAATGATGCTG
CAGTTTTAGCCACAACTGAAGTGAGAGCCGTGTTCGGAGAGAAGCCGGCA
CCGGAGGAGAAAGAGAAGGACGGGAAACGGAAGGAGATCACCGATGACGA
TGATTGTGGTGTGTGTTTCGAAGCGTTGATTGAAGCCAATGAGAAGGATT
TGGATTGGTGCAAAGATGGCTGTGGCAAATCTATCCATAAACAATGTTGG
AGCATGTGGAGGAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060966-exon-scaffold_350-1575043694:111281..113094 | TCONS_00060966-exon-scaffold_350-1575043694:111281..113094 | Clytia hemisphaerica | exon |
| TCONS_00060966-exon-scaffold_350-1575043694:109923..110662 | TCONS_00060966-exon-scaffold_350-1575043694:109923..110662 | Clytia hemisphaerica | exon |
| TCONS_00060966-exon-scaffold_350-1510915933:111281..113094 | TCONS_00060966-exon-scaffold_350-1510915933:111281..113094 | Clytia hemisphaerica | exon |
| TCONS_00060966-exon-scaffold_350-1510915933:109923..110662 | TCONS_00060966-exon-scaffold_350-1510915933:109923..110662 | Clytia hemisphaerica | exon |
| TCONS_00060966-exon-scaffold_350-1491911889:111281..113094 | TCONS_00060966-exon-scaffold_350-1491911889:111281..113094 | Clytia hemisphaerica | exon |
| TCONS_00060966-exon-scaffold_350-1491911889:109923..110662 | TCONS_00060966-exon-scaffold_350-1491911889:109923..110662 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:109923..113094 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
