TCONS_00061653-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061653-protein
Unique NameTCONS_00061653-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061653-protein ID=TCONS_00061653-protein|Name=TCONS_00061653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
VGLFNGTIAVYNIRACKDECVLDSIDSPGKHSSPVWQLKWIERDKGTGDE
KGEVLISASADGRVTQWSIRKGFEFLDLMKLKRLTATKQQGNRNKNKQPE
NSPSAAKKNDALISRYASCMCFAFHNSDGNVYIAGTEEGYIHRCSCSYNE
QFLETYSGHKSSVYKVMWSPFDSSFFLSCSSDWTLRLWHMDKQNPILQFQ
SSTKAIIDMDWSPISAVMFAAVTEKQIEVWDLSINTLDPLLVNLPVTEVN
LTSVKFALNSEALLVGDCEGHVTIYQLREMNLNQAAIKNDGWLSKVVSSA
VSPNSDDTMEENNDQTNQENGENVGR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038663XLOC_038663Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061653TCONS_00061653Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 237..276
e-value: 170.0
score: 3.0
coord: 149..189
e-value: 8.1E-8
score: 42.0
coord: 18..68
e-value: 0.75
score: 17.8
coord: 192..231
e-value: 0.9
score: 17.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 151..188
e-value: 2.1E-4
score: 21.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 156..198
score: 12.046
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 199..233
score: 8.503
NoneNo IPR availableGENE3D2.80.10.50coord: 1..94
e-value: 1.1E-8
score: 34.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..326
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 95..309
e-value: 1.1E-30
score: 106.1
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 156..285
score: 18.141
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 2..284

Blast
[Close]
BLAST of TCONS_00061653-protein vs. Swiss-Prot (Human)
Match: WDR78 (WD repeat-containing protein 78 OS=Homo sapiens GN=WDR78 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 4.748e-99
Identity = 146/281 (51.96%), Postives = 194/281 (69.04%), Query Frame = 0 
Query:    1 VGLFNGTIAVYNIRACKDECVLDSIDSPGKHSSPVWQLKWIERDKGT-GDEKGEVLISASADGRVTQWSIRKGFEFLDLMKLKRLTATKQQGNRNKNKQPENSPSAAKKNDALISRYASCMCFAFHNSDGNVYIAGTEEGYIHRCSCSYNEQFLETYSGHKSSVYKVMWSPFDSSFFLSCSSDWTLRLWHMDKQNPILQFQSSTKAIIDMDWSPISAVMFAAVTEKQIEVWDLSINTLDPLLVNLPVTEVNLTSVKFALNSEALLVGDCEGHVTIYQLREM 280
            VG  NGTIA+YN+R+  +  VLDS +SP KH  PVWQL+WIE+D+GT GD K E+L+S SADGR+++W IRKG +  DLM+LKR TA   +                KK++ALISR A  MCFAFH  D N+Y+AGTEEG+IH+CSCSYNEQ+L+TY GHK  VYKV W+PF    FLSCS+DW + +W  +   P L F  +T  + D+ WSP S+ +FAA  E ++E+WDL I+TLDPL+VN     +  T++ FA  ++ LLVGD +G V++Y+LR M
Sbjct:  554 VGYHNGTIAIYNVRSNSNVPVLDSSESPQKHLGPVWQLQWIEQDRGTTGDGKREILVSISADGRISKWVIRKGLDCYDLMRLKRTTAASNKKGG----------EKEKKDEALISRQAPGMCFAFHPKDTNIYLAGTEEGHIHKCSCSYNEQYLDTYRGHKGPVYKVTWNPFCHDVFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAANENRVEIWDLHISTLDPLIVNTANPGIKFTTILFAKQTDCLLVGDSDGQVSVYELRNM 824
The following BLAST results are available for this feature:
BLAST of TCONS_00061653-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR784.748e-9951.96WD repeat-containing protein 78 OS=Homo sapiens GN... [more]
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