TCONS_00061658-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061658-protein
Unique NameTCONS_00061658-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061658-protein ID=TCONS_00061658-protein|Name=TCONS_00061658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MKDKIETSTSKRSYQSFGHSQHTSHSSLSQAGSKSGLYGNTSKRNVAFES
KVEKAPPKKNVVQVLDEHGNDVTPRSLLSSDLIGQIGKTSKTMLNLNESG
SVGTPTDLFTQSMYGASTMQTSYAAGFSRSIMSSMMGSSRASLDSVTDEI
SEPTHHHSFGGLQDVERKRADVKESLTMDDLKKKVNITLEETDTVWILDI
PGVSVSEASEGAEEIKERNRKYDQLCANRAGNDMYVQHGIQTFNDALKTK
EIQTNTISTKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038665XLOC_038665Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061658TCONS_00061658Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 261..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

Blast
[Close]
BLAST of TCONS_00061658-protein vs. Swiss-Prot (Human)
Match: WDR78 (WD repeat-containing protein 78 OS=Homo sapiens GN=WDR78 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.491e-30
Identity = 76/209 (36.36%), Postives = 124/209 (59.33%), Query Frame = 0 
Query:   52 VEKAPPKKNVVQVLDEHGNDVTPRSLLSSDLIGQIGKTSKTMLNLNESGSVGTPTDLFTQSMYGASTMQTSYAAGFSRSIM--SSMMGSSRASLDSVTDEISEPTH-HHSFGGLQDVERKRADVKESLTMDDLKKKVNITLEETDTVWILDIPGVSVSEASEGAEEIKERNRKYDQLCANRAGNDMYVQHGIQTFNDALKTKEIQTNTI 257
            VEK  P     QV D +G DVTPR L   D +    K SK + +  + GS+G+   + + S+Y  +T+  S    F+RS++  S++  SS ++ +S+ +++ EP++         D++  RA  ++ +T +DL+K + I L ET+T+   D+P V VS  SE AE++ +RN+ Y+ LC NR GND+YV+  +QTFN A K K++Q + I
Sbjct:  104 VEKPNPNIKTTQVFDINGTDVTPRPLYHPDPLTGTAKPSKLLTS--QEGSLGSEF-ISSYSLY-QNTINPSTLGQFTRSVLGSSTVSKSSVSASESIAEDLEEPSYKRERLTSFTDLQVIRAAPEKIVTKEDLEKNIEIILTETETLRFFDLPTVMVSVESEEAEKVTQRNKNYEVLCRNRLGNDLYVERMMQTFNGAPKNKDVQCDKI 308
The following BLAST results are available for this feature:
BLAST of TCONS_00061658-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR782.491e-3036.36WD repeat-containing protein 78 OS=Homo sapiens GN... [more]
back to top