TCONS_00061697-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061697-protein
Unique NameTCONS_00061697-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length200

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061697-protein ID=TCONS_00061697-protein|Name=TCONS_00061697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MSYYFYLLLEPIRNHTTGGLLCEQENPDDPCPDEIGQKIVPIYMAIYMLM
TNILLLNLLIAIFNNTYEKVQENSDRLWKFKRYDVISEYNDRPSFCPPFI
VLAHIWFFGLFLFRCCCKGTRQTKFGTLNKSFYVDEIILLRKWEKSRMEA
YNYLHEKREADTQDKRVKSIXGLEITIFRWSDTLSDQKLIWFGHVLRLLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038687XLOC_038687Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061697TCONS_00061697Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002153TRPC_channel
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005262calcium channel activity
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0070588calcium ion transmembrane transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070588 calcium ion transmembrane transport
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005262 calcium channel activity
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002153Transient receptor potential channel, canonicalPRINTSPR01097TRNSRECEPTRPcoord: 67..80
score: 34.87
coord: 45..66
score: 37.17
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 31..74
e-value: 9.4E-7
score: 28.2

Blast
[Close]
BLAST of TCONS_00061697-protein vs. Swiss-Prot (Human)
Match: TRPM3 (Transient receptor potential cation channel subfamily M member 3 OS=Homo sapiens GN=TRPM3 PE=2 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 3.466e-19
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 0 
Query:   30 PCPDEIGQKIVPIYMAIYMLMTNILLLNLLIAIFNNTYEKVQENSDRLWKFKRYDVISEYNDRPSFCPPFIVLAHIWFFGLFLFRCC 116
            PC  + G  IVP  MA Y+L+ NILL+NLLIA+FNNT+ +V+  S+++WKF+RY +I  +++RP   PP I+ +H+    +F   CC
Sbjct: 1106 PC--KTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHMTM--IFQHLCC 1188
The following BLAST results are available for this feature:
BLAST of TCONS_00061697-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRPM33.466e-1945.98Transient receptor potential cation channel subfam... [more]
back to top