TCONS_00061701-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061701-protein
Unique NameTCONS_00061701-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061701-protein ID=TCONS_00061701-protein|Name=TCONS_00061701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
LGSYSEHSEWTIENAYLKRNVLYYGCCPEPYPDVTAEFTLKRKPLFYVLN
LLLPMIFIGVLTLLAFFLPAESGERISFAVTLMLALTVFMLIVADMIPAN
SEIVPMLGIFFTCVMIEMVLMVFAMCYTLNLHFKEPNAENRIGKWTRAIV
YNRLAIYLGVRKRDEKFANANGRCTARKYANGNGPYEDDGIEDVAANKNV
VRFTGLSHIDKSDFEKESTSTKLMKKSIKMAEDKAREEEIEKIIKSELVI
CAKTFDVLCLMVFAFMFVLILLIYLLSSDA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038691XLOC_038691Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061701TCONS_00061701Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006202Neur_chan_lig-bd
IPR006029Neurotrans-gated_channel_TM
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainGENE3D2.70.170.10coord: 1..50
e-value: 2.1E-10
score: 39.8
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 3..44
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 51..274
e-value: 1.1E-28
score: 100.9
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 44..277
NoneNo IPR availableGENE3D1.20.58.390coord: 51..279
e-value: 1.1E-35
score: 122.0

Blast
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BLAST of TCONS_00061701-protein vs. Swiss-Prot (Human)
Match: CRFM7 (CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHRFAM7A PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.586e-41
Identity = 97/306 (31.70%), Postives = 155/306 (50.65%), Query Frame = 0 
Query:    1 LGSYSEHSEWTIENAYLKRNVLYYGCCPEPYPDVTAEFTLKRKPLFYVLNLLLPMIFIGVLTLLAFFLPAESGERISFAVTLMLALTVFMLIVADMIPANSEIVPMLGIFFTCVMIEMVLMVFAMCYTLNLHFKEPNAENRIGKWTRAIVYNRLAIYLGVRKRDEK-----FANANGRCT----------ARKYANGN----GPYEDDGIE-------DVAANKNVVRFTGLSHI--DKSDFEKESTSTKLMKKSIKMAEDKAREEEIEKIIKSELVICAKTFDVLCLMVFAFMFVLILLIYLLSS 278
            +  Y  + EW +     KR+  +Y CC EPYPDVT   T++R+ L+Y LNLL+P + I  L LL F LPA+SGE+IS  +T++L+LTVFML+VA+++PA S+ VP++  +F   MI + L V      L  H  +P+   ++ KWTR I+ N  A +L +++  E        +   RC+              +NGN    G    DG+         V   +     T   H+       E +    K++++ ++   ++ R ++  + + SE    A   D LCLM F+ +F +I  I +L S
Sbjct:   97 ISGYIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDG-GKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHKQRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEHLLHGGQPPEGDPDLAKILEE-VRYIANRFRCQDESEAVCSEWKFAACVVDRLCLMAFS-VFTIICTIGILMS 399
The following BLAST results are available for this feature:
BLAST of TCONS_00061701-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRFM71.586e-4131.70CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHR... [more]
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