TCONS_00061722-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061722-protein
Unique NameTCONS_00061722-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061722-protein ID=TCONS_00061722-protein|Name=TCONS_00061722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MNIGCFLRITPKVGLLNSRCFSINFGNNLAKNKYITPTRDLILQNEKLKE
EIAVKEKSCGIEDPEQAQEIIHKNSNPRSLELLGWNKPGGFTTLHEKRNF
FNRLNLDITHRHTKAYVENIDGDIICYAATTEHYIAKRLHSTTDVMAVVN
IAKILAQRLKQIGIERVHWFTYQNRTTEKMREFEGILKNNGIILSELPTR
IIQGPSQTLPPPRKERKLPVKLQCGTKRRGTIARKNKRTDFLDHLITDKF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038712XLOC_038712Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061722TCONS_00061722Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.420.100coord: 90..207
e-value: 5.4E-11
score: 42.3
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 103..175
e-value: 1.03493E-8
score: 49.8459
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 103..168

Blast
[Close]
BLAST of TCONS_00061722-protein vs. Swiss-Prot (Human)
Match: RM18 (39S ribosomal protein L18, mitochondrial OS=Homo sapiens GN=MRPL18 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.855e-17
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 0 
Query:   51 EIAVKEKSCGIEDPEQAQEIIHKNSNPRSLELLG-WNKPGGFTTLHEKRNFFNRLNLDITHRHTKAYVENIDGDIICYAATTEHYIAKRLHSTTDVMAVVNIAKILAQRLKQIGIE-RVHWFTYQNRTTEKMREFEGILKNNGIILSELPTRIIQ 203
            E A K +   +E+   A E    N NPR+LELL    K  G+ T+   R F++RL +  T  H +A VE+ +G ++  A+T E  I K L+ST +V+A  +I ++LAQR  + GI   V+  T     ++ M+  +  +   G++L E P RI +
Sbjct:   29 EPAAKPEVDPVENEAVAPEFT--NRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLRE-PQRIYE 180
The following BLAST results are available for this feature:
BLAST of TCONS_00061722-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM181.855e-1734.1939S ribosomal protein L18, mitochondrial OS=Homo s... [more]
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