TCONS_00061886-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061886-protein
Unique Name	TCONS_00061886-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	910

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061886-protein ID=TCONS_00061886-protein|Name=TCONS_00061886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=910bp
DLKNCLKQKKKMTKPDLCEVLWSPSNPNRFIKFDTGDGSNNISLYQVYRD
RNLLSNKNQVVQLADNVYVQNIATNSDYNSIKCIAWCPKAELADHCVLAT
GLSNGRVSIHNLGSEPPSNSGLQLNQVLLPKMERVCHDVAWNSVEPNLIA
VALDKVRVDCSLAVWDIAAQGPQQGVRQPVFLHGSGESTFSVQWMPDSPN
TLVAGVTKWIRLFDIRTQNQNPKLIAHTKAIYGICIDPNNPSRLASFAKG
QKGVVVWDVRKPEKPIVTINQTNPVLKVQWCPKRSHMISVLQKDSNAVKY
YDLQFSTSLQYNSNVDVDNDSILFERNIMLPKSTSSTVSSYDWNPDHEMT
LLAVTKTGSLHYLKVFERIAMSWSPSSEVMWACGSQMFLSDKPDPSMQDD
ISFVMKKRAEQGYGEAFVMKDDRKLNDVLNEPALFNLWTWLKRAKKLKDH
DQRKVRKFFGVKAIIKGDLSMEMRRHKAPQTPTSREMAPSFPQQNQNSKE
GRNLQTLKEEKIGGNLIATQYSNDDRKLALFLCEWDVTDETLRERLDQLV
AKNEIERAAAVALFHNKLDWTIDILGSTQANQKKELPIVAMALSGYNDSI
KKGSMWIANCQRLGQQLTNPYLRAMFAFLTAEGEDFTSVLKENGMDLKDR
IAFACRYLSDAKLTNYVENVTSKMITSGGLEGLLLTGLTTDGIDLLENYI
TKYGDVQTAVLIVLVMKYSDVMKDERVNDWIEYYRCLLDRWRMWHKRAQF
DSLVQSMSLQRKIPNQISVTCTYCSKPVSLNMMAAGGLRSTRFLYGGAGG
ANRQNKAMSCPGCRQPLPRCSVCLINMGSLSTHQPRTGNQKPKLENNVNS
FQNWFTWCQMCRHGGHAAHLADWFVDHVECPVTSCNCVCNALDRVSMVTP
QELPVKKISM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038812	XLOC_038812	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061886	TCONS_00061886	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR031488	Zn_ribbon_mio
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 262..302 e-value: 17.0 score: 9.3 coord: 65..111 e-value: 360.0 score: 0.8 coord: 217..258 e-value: 1.5 score: 15.9 coord: 175..214 e-value: 46.0 score: 6.5
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 8..380 e-value: 2.3E-29 score: 101.7
IPR031488	WD repeat protein mio, zinc-ribbon like domain	PFAM	PF17034	zinc_ribbon_16	coord: 771..890 e-value: 4.0E-22 score: 78.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 478..501
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 182..311 score: 9.678
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 32..383

Blast

[Close]

BLAST of TCONS_00061886-protein vs. Swiss-Prot (Human)
Match: MIO (GATOR complex protein MIOS OS=Homo sapiens GN=MIOS PE=1 SV=2)

HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 337/928 (36.31%), Postives = 515/928 (55.50%), Query Frame = 0

Query:   13 TKPDLCEVLWSPSNPNRFIKFDTGDGSNNISLYQVYRDRNLLSNKNQVVQLADNVYVQNIATNSDYNSIKCIAWCPKAELADHCVLATGLSNGRVSIHNLGSEPPSNSGLQLNQVLLPKMERVCHDVAWNSVEPNLIAVALDKVRVDCSLAVWDIAAQG-----PQQGVR-------------QPVFLHGSGESTFSVQWMPDSPNTLVAGVTKWIRLFDIRTQNQNPKLIAHTKAIYGICIDPNNPSRLASFAKGQKGVVVWDVRKPEKPIVTIN-QTNPVLKVQWCPKRSHMISVLQKDSNAVKYYDLQFSTSLQYNSNVDVDNDSILFERNIMLPKSTSSTVSSYDWNPDHEMTLLAVTKTGSLHYLKVFERIAMSWSPSSEVMWACGSQMF--LSDKPDPSMQDDISFVMKKRAEQGYGEAFVMKDDRKLNDVL---NEPALFNLWTWLKRAKKL-KDHDQRKVRK-----FFGVKAIIKGDLSMEMRRHKAPQTPTSREMAPSFPQQNQNSKEGRNLQTLKEEKIGGNLIATQYSNDDRKLALFLCEW--DVTDETLRERLDQLVAKNEIERAAAVALFHNKLDWTIDILGSTQANQKKE--LPIVAMALSGYNDSIKKGSMWIANCQRLGQQLTNPYLRAMFAFLTAEGEDFTSVLKENGMDLKDRIAFACRYLSDAKLTNYVENVTSKMITSGGLEGLLLTGLTTDGIDLLENYITKYGDVQTAVLIVLVMKYSDVMKDERVNDWIEYYRCLLDRWRMWHKRAQFDSLVQSMSLQRKIPNQISVTCTYCSKPVSLNMMAAGGLRSTRFLYGGAGGANRQNKAMSCPGCRQPLPRCSVCLINMGSLSTHQPRTGNQKPKL----ENNVNSFQNWFTWCQMCRHGGHAAHLADWFVDHVECPVTSCNCVCNALDRVSMVTPQE 902
            TKPD   +LW+P + +RF+  D+      +SLY V    N    K   ++L+++     ++ NSD   +KC+AW    +    C+LA G +NGRV + +LG +  S     + +  +PK  R C+ +AWN ++ N +A  LDK R D S+ +WDI ++      P + V+             +P++  G  ++  S+ W+P     L+AG+ + + +FD+R  +Q  K+  +TKA+ G+ +DP    R+ASF +GQ  V +WD+RK EKP++T+  Q  P+ KV WCP R+ +++ L +DSN ++ YD+Q +      + +  + +  + ER++   +   + ++S+ W+P  +  ++ VT   ++    VFERI+++WSP + +MWACG  ++    ++ D S++ DI+  M+ RA   YG   +  +    N +L    +P L +LW  L   K+  +D DQ+         + G+K+I+K  L M           +SR       +Q+       ++Q L EE+I               LAL LC W    TD  +   L+ LV + E ERAAAVALF+  +   I IL    +++K +  L +VAMALSGY D  +K S+W   C  L  QL NPYL  MFAFLT+E   +  VL EN + ++DR+AFAC++LSD +L  Y+E +T++M  +G LEG+LLTGLT DG+DL+E+Y+ + GDVQTA   +L     DV+KDERV  WIE YR LLD WR WHKRA+FD     +    K   Q+ V+C +C K +S +  A    +   F   G  G+  ++K  SCPGCR+PLPRC++CLINMG+  +  P       K+    +  +  F NWFTWC  CRHGGHA H+  WF DH ECPV++C C C  LD    + P E
Sbjct:    4 TKPD---ILWAPHHVDRFVVCDS-----ELSLYHVESTVNS-ELKAGSLRLSEDSAATLLSINSDTPYMKCVAWYLNYD--PECLLAVGQANGRVVLTSLGQDHNSKFKDLIGKEFVPKHARQCNTLAWNPLDSNWLAAGLDKHRADFSVLIWDICSKYTPDIVPMEKVKLSAGETETTLLVTKPLYELGQNDACLSLCWLPRDQKLLLAGMHRNLAIFDLRNTSQ--KMFVNTKAVQGVTVDPYFHDRVASFYEGQ--VAIWDLRKFEKPVLTLTEQPKPLTKVAWCPTRTGLLATLTRDSNIIRLYDMQHTP-----TPIGDETEPTIIERSV---QPCDNYIASFAWHPTSQNRMIVVTPNRTMSDFTVFERISLAWSPITSLMWACGRHLYECTEEENDNSLEKDIATKMRLRALSRYG---LDTEQVWRNHILAGNEDPQLKSLWYTLHFMKQYTEDMDQKSPGNKGSLVYAGIKSIVKSSLGM---------VESSRHNWSGLDKQS-------DIQNLNEERI---------------LALQLCGWIKKGTDVDVGPFLNSLVQEGEWERAAAVALFNLDIRRAIQILNEGASSEKGDLNLNVVAMALSGYTD--EKNSLWREMCSTLRLQLNNPYLCVMFAFLTSETGSYDGVLYENKVAVRDRVAFACKFLSDTQLNRYIEKLTNEMKEAGNLEGILLTGLTKDGVDLMESYVDRTGDVQTASYCMLQGSPLDVLKDERVQYWIENYRNLLDAWRFWHKRAEFDIHRSKLDPSSKPLAQVFVSCNFCGKSISYSCSAVPH-QGRGFSQYGVSGSPTKSKVTSCPGCRKPLPRCALCLINMGTPVSSCPGGTKSDEKVDLSKDKKLAQFNNWFTWCHNCRHGGHAGHMLSWFRDHAECPVSACTCKCMQLDTTGNLVPAE 871

The following BLAST results are available for this feature:

BLAST of TCONS_00061886-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061886-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MIO	0.000e+0	36.31	GATOR complex protein MIOS OS=Homo sapiens GN=MIOS...	[more]

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TCONS_00061886-protein (polypeptide) - C. hemisphaerica