homeodomain transcription factor protein HOX1 (polypeptide) - C. hemisphaerica

Overview
Namehomeodomain transcription factor protein HOX1
Unique NameTCONS_00061956-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061956-protein ID=TCONS_00061956-protein|Name=homeodomain transcription factor protein HOX1|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MQDSTTEGPKHTEEIHQKQDTLQLPSTTLQQQHQEDMAATTASCQFLNCH
GYSHTLQYFPPSCSPLTMEKLRQNGVAVPTDLTFPYMQQEYNLQEDFQQL
SQHAQQEKEDQQHYQMMSDSSNTNNKRKKQGQQKRSWNTENYQWMNIKRT
RKPQRMEDMDNLDLNNNNMDQKSDVISLTETSLDSFNSSSESIQPNPPQT
TTSATGEQGKKRICFSQKQVVELEKEFHFNKYLTRARRVEISQSLNLTEA
QIKIWFQNRRMKHKREMKGKRFQLRKHDTPPNRCPVEYPCVTSDTMQNIQ
CMTYQEQMPVFPPITPPV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038841XLOC_038841Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061956TCONS_00061956Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 255..264
score: 80.31
coord: 230..241
score: 49.42
coord: 245..255
score: 65.34
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 208..270
e-value: 7.2E-27
score: 105.3
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 210..265
e-value: 3.9E-21
score: 74.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 206..266
score: 20.585
NoneNo IPR availableGENE3D1.10.10.60coord: 188..267
e-value: 6.9E-24
score: 83.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..169
NoneNo IPR availableCDDcd00086homeodomaincoord: 210..267
e-value: 3.1359E-20
score: 81.1356
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 241..264
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 192..266

Blast
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BLAST of homeodomain transcription factor protein HOX1 vs. Swiss-Prot (Human)
Match: HXA3 (Homeobox protein Hox-A3 OS=Homo sapiens GN=HOXA3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.581e-24
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 0 
Query:  210 KKRICFSQKQVVELEKEFHFNKYLTRARRVEISQSLNLTEAQIKIWFQNRRMKHKREMKGKRFQLRKHDTPPNRCPVEYPCVTS--DTMQN-IQCMTYQEQMPVFPPITPP 317
            + R  ++  Q+VELEKEFHFN+YL R RRVE++  LNLTE QIKIWFQNRRMK+K++ KGK          P+R PV  P      ++M + +  + Y+ Q P  PP + P
Sbjct:  193 RARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVP-PGAGGYLNSMHSLVNSVPYEPQSP--PPFSKP 300
The following BLAST results are available for this feature:
BLAST of homeodomain transcription factor protein HOX1 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HXA33.581e-2446.85Homeobox protein Hox-A3 OS=Homo sapiens GN=HOXA3 P... [more]
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