TCONS_00062158-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062158-protein
Unique Name	TCONS_00062158-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1074

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062158-protein ID=TCONS_00062158-protein|Name=TCONS_00062158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1074bp
MAASSHSPHKETDKLLALKKRKYNDQTLSKPTDANQWIENNIKVFQSAGV
EKQERELTSCHSYGEIHFEEQETYSKFIRIAYNSDPECVLKLLTEIWNID
FPKLALFFRNKINFLRSLNAENPFHRTRSTWLMTDGLQQVNESFFLDNCT
RDQMQIGILPLDYLKTQANQIHAHLSIADDSSLLSPLCSAFLFIDDGLLV
SKEEAVQHFWNTLALYLVESDLPTLAIFSDSSPIKDISTMDPKVHKLLLK
GQQNGPASALRIPQQFSLDIENLDSAIGDDVEIFNTEMHKQRLRIFSAGC
SESEPVQDEDYSEVIKCINVNKDTLHFSEEGDDLLFLMLKIFCQALVEED
KKYVLMGFSIIWDQIDIAKTYLYDYLKGQIHVESSEYFSLFMLCLAYQRV
NFIEEYFQTHLNQLQISFNDIEVLYGFGFNDGKSQEILEPYFENGFKQTD
DKTTERLGLFNAMTGRSSLVKSAVDMISVRNALNVLCKKIQKTEFFFPVV
DDKTINPLNEVFLWAVVNGYHKIAMWLWDKSDNSFERVLIAEEIYHKCYR
RSTKVNIVLLPQFYYQCYEEFRDLAVNFLEVSYDMNIEDSLKLLCKPSQV
FEQGGGLQTTPLDIASSIRWPSFIGHQSVQRLLTEVWTGSMPYNIAFWQI
FLSFIFPPYLLWVTFREDVTIRNYVREMGRHNRDYIDGTSTKTKPPSLSF
GKKLLLFYTAPVTKFFINLATFIIFLVFVSIDAIENRTGAFDVDEWVTMV
FFISFLTYEIRKVASVDMSAKRRIKKHFGDFWHIMDLFVFSSYAISITLR
ALHYDKNNFFMSITAFLSILRILKAFYGFSRLGPYIFMISRMFKEMMIFL
VVLFVFMVSYGVGMTSVLLPQRVSSKTFKDVLLYPFLNALGNIDFTYDQK
EANQTSFNTYKYNDYGEYVGWAFMIIYLLVANILLLNLLIAVFGSVYEEV
KDDSKNVWSFQRFQIVEEYVRRSRIPNPFSFFSDMYHLILWMVGKCCSGR
KRRSLTIGTAVMSVSKDTKELIFFERKVAQRVRKEYEASLTKEEQSLLLE
RMMKQIEELKDNQKKLIQKIHHKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038975	XLOC_038975	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062158	TCONS_00062158	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1042..1074
None	No IPR available	GENE3D	1.20.120.350		coord: 9..827 e-value: 1.1E-6 score: 27.6 coord: 907..1068 e-value: 0.13 score: 11.0
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 714..954 e-value: 5.6E-18 score: 65.0

Blast

[Close]

BLAST of TCONS_00062158-protein vs. Swiss-Prot (Human)
Match: TRPM1 (Transient receptor potential cation channel subfamily M member 1 OS=Homo sapiens GN=TRPM1 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 2.516e-51
Identity = 165/618 (26.70%), Postives = 290/618 (46.93%), Query Frame = 0

Query:  500 VDDKTIN----PLNEVFLWAVVNGYHKIAMWLWDKSDNSFERVLIAEEIYHKCYRRSTKVNIVL-LPQFYYQCYEEFRDLAVNFLEVSYDMNIEDSLKLLCKPSQVFEQGGGLQTTPLDIASSIRWPSFIGHQSVQRLLTEVWTGS--MPYNIAFWQIFLSFIFPPYLLWVTFREDVTIRNYVREMGRHNRD-----------YIDGTSTK-------TKPPSLSFGKKLLLFYTAPVTKFFINLATFIIFLVFVSIDAIENRTGAFDVDEWVTMVFFISFLTYEIRKV-ASVDMSAKRRIKKHFGDFWHIMDLFVFSSYAISITLRALHYDKNNFFMS-------ITAFLSILRILKAFYGFSRLGPYIFMISRMFKEMMIFLVVLFVFMVSYGVGMTSVLLPQRVSS-KTFKDVLLYPFLNALG-----NIDFTYDQKEANQTSFNTYKYNDY-------GEYVGWAFMIIYLLVANILLLNLLIAVFGSVYEEVKDDSKNVWSFQRFQIVEEYVRRSRIPNPFSFFSDMYHLILWMVGKCCSGRK--RRSLTIGTAVMSVSKDTKELIFFERKVAQR--VRKEYEASLTKEEQ----SLLLERMMKQIEELKDNQ 1063
            VDD  ++    P +E+ +WAV+    K+A++LW + + S  + L+A ++Y      S++ ++V  + Q      ++F  LA+  L+ SY  + + ++KLL      +E      +T L +A + +   FI H   Q LLT++W G   M  N    ++ +  + PP +L++ FR   T  ++  +  + N D             D  S K        K  S+  G K+  FY AP+ KF+    +++ +L+  +   +    G   + EW+ + + +S    +IR++  S      ++IK    ++W+I DL   S++ I   LR     +N  +M        +      +R+L  F     LGPY+ MI +M  +M+ F+V++ V ++S+GV   ++L P+   S K  +++   P+    G      ID  Y  +       N Y            G ++  A M  YLLVANILL+NLLIAVF + + EVK  S  VW FQR+Q++  +  R  +P P    S +Y +I+ + G+C   R+  +     G  +    ++ K L  FE +  Q     KE E   + +E+    S  +E M  ++EE+ + +
Sbjct:  600 VDDPAVSRFQYPFHELMVWAVLMKRQKMAVFLWQRGEESMAKALVACKLYKAMAHESSESDLVDDISQDLDNNSKDFGQLALELLDQSYKHDEQIAMKLL-----TYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGL-KVIMGILLPPTILFLEFR---TYDDFSYQTSKENEDGKEKEEENTDANADAGSRKGDEENEHKKQRSIPIGTKICEFYNAPIVKFWFYTISYLGYLLLFNYVILVRMDGWPSLQEWIVISYIVSLALEKIREILMSEPGKLSQKIKVWLQEYWNITDLVAISTFMIGAILRL----QNQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPEEKPSWKLARNIFYMPYWMIYGEVFADQIDL-YAMEINPPCGENLYDEEGKRLPPCIPGAWLTPALMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQEERDRGLKLFLSDEELKRLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINERE 1203

The following BLAST results are available for this feature:

BLAST of TCONS_00062158-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062158-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRPM1	2.516e-51	26.70	Transient receptor potential cation channel subfam...	[more]

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TCONS_00062158-protein (polypeptide) - C. hemisphaerica