TCONS_00062205-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062205-protein
Unique NameTCONS_00062205-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length183

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062205-protein ID=TCONS_00062205-protein|Name=TCONS_00062205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MFSSEKYIKDQREKSGRRNRFDYLQSLVTEFQDTDNEESKLQILANLGNF
AYDPINFNHLRELNVVDLFIDMLSENNEKFVEFGMAGLCNLCVESTNRDH
IIKNEGVDAIMQCFSSTNEEIVLNAMTTLIYLVTPATRKDIITEEIVDCM
KQLKTSTNPRLKNLATIFLQLIPVKSTYLINSN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038999XLOC_038999Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062205TCONS_00062205Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 19..173
e-value: 2.2E-17
score: 62.7
NoneNo IPR availableCDDcd00020ARMcoord: 60..172
e-value: 4.83746E-7
score: 44.2276
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 22..172

Blast
[Close]
BLAST of TCONS_00062205-protein vs. Swiss-Prot (Human)
Match: ARMC7 (Armadillo repeat-containing protein 7 OS=Homo sapiens GN=ARMC7 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.070e-53
Identity = 78/154 (50.65%), Postives = 107/154 (69.48%), Query Frame = 0 
Query:   19 NRFDYLQSLVTEFQDTDNEESKLQILANLGNFAYDPINFNHLRELNVVDLFIDMLSENNEKFVEFGMAGLCNLCVESTNRDHIIKNEGVDAIMQCFSSTNEEIVLNAMTTLIYLVTPATR--KDIITEEIVDCMKQLKTSTNPRLKNLATIFLQ 170
             R  YLQ+LVTEFQ+T ++++K Q+LANL NFAYDP N+ +LR+L V+DLF+D LSE NE  VEF + GLCNLC +  N++HI+   GV  I+ C SS NEE VL+A+TTL++L  P      ++    +V CM +   S + RL+NLA IFL+
Sbjct:   12 GRLGYLQALVTEFQETQSQDAKEQVLANLANFAYDPSNYEYLRQLQVLDLFLDSLSEENETLVEFAIGGLCNLCPDRANKEHILHAGGVPLIINCLSSPNEETVLSAITTLMHLSPPGRSFLPELTATPVVQCMLRFSLSASARLRNLAQIFLE 165
The following BLAST results are available for this feature:
BLAST of TCONS_00062205-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARMC71.070e-5350.65Armadillo repeat-containing protein 7 OS=Homo sapi... [more]
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