TCONS_00062230-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062230-protein
Unique NameTCONS_00062230-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062230-protein ID=TCONS_00062230-protein|Name=TCONS_00062230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
EKIGSLKKNNLVNNFDEFLRLSTIKIIYRTSRMHWSQGLVCLLFAVLSFG
VQETSTQMQMGGDMNRILPDWPKIGDRITQPFLDQLMVSQLLEQNLTLGF
FLKGLNGPPGPPGPPGPSGEPGAPGLPGAPGAPGHVGEDGAPGPMGPPGL
SGGPGMPGYPGEKGDPGPSGLPGSAGLPGAPGLPGPQGSAGDSGPEPIKP
EFTVACEGQKLWIQCQQYELIKIKEAYWGREDHVTCSDTPAGLSREVCDA
NSDNAFTKVDAQCKGQQNCEVVASNIFFDDNSCGNVYKYLKVKYECEADQ
QNSMDVLKEGGRRRRKKKRDTKEKRSFRDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039010XLOC_039010Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062230TCONS_00062230Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000922Lectin_gal-bd_dom
IPR008160Collagen
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030246 carbohydrate binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000922D-galactoside/L-rhamnose binding SUEL lectin domainPFAMPF02140Gal_Lectincoord: 213..296
e-value: 2.8E-19
score: 69.2
IPR000922D-galactoside/L-rhamnose binding SUEL lectin domainPROSITEPS50228SUEL_LECTINcoord: 205..297
score: 12.237
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 104..161
e-value: 3.0E-9
score: 36.4
coord: 140..195
e-value: 1.4E-8
score: 34.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 307..330

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062230-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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